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Table 4 List of SNPs significantly associated with seedling resistance to race TRTTF

From: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

SNP Chra Pos (cM) P value R2 (%)b
IWB843 0 0.0 1.43E-04 15.4
IWB8113 0 0.0 8.36E-04 13.2
IWB9699 0 0.0 8.36E-04 12.9
IWB25143 0 0.0 4.62E-07 10.8
IWB27028 0 0.0 5.95E-04 10.7
IWB48121 0 0.0 1.83E-04 7.7
IWB64530 0 0.0 8.36E-04 7.6
IWB67724 0 0.0 2.26E-04 6.1
IWB68822 0 0.0 8.36E-04 4.2
IWB9794 1B 43.9 6.06E-04 4.2
IWB72495 1B 53.3 6.06E-04 4.1
IWB11356 1B 62.4 5.66E-04 4.0
IWB11357 1B 62.4 5.66E-04 3.4
IWB60559 1B 62.4 6.06E-04 3.2
IWB65404 1B 62.4 4.44E-04 3.2
IWB11819 1B 62.6 6.06E-04 3.2
IWB11820 1B 62.6 4.44E-04 3.2
IWB34561 1B 62.6 6.06E-04 3.6
IWB47684 1B 62.6 7.00E-04 3.6
IWB53143 1B 62.6 9.38E-04 3.5
IWB6592 1B 62.6 6.06E-04 3.5
IWB41306 1B 64.9 6.06E-04 3.4
IWB44021 1D 8.7 5.95E-04 3.4
IWA8551 1D 50.6 7.02E-04 3.4
IWB24961 5D 200.3 3.70E-04 3.4
IWB57210 5D 200.3 3.70E-04 3.4
IWB12448 6A 1.9 4.82E-04 3.4
IWB33595 6A 3.4 1.14E-04 3.4
IWB11274 6A 4.7 3.93E-08 3.3
IWB53755 6A 4.7 1.25E-04 3.2
IWA5416 6A 5.6 2.81E-09 3.4
IWA5781 6A 5.7 3.17E-09 3.3
IWB7601 6A 6.4 1.85E-05 3.7
IWB47842 6A 7.0 1.31E-04 3.7
IWA3856 6A 12.5 1.85E-05 28.6
IWA6871 6A 12.5 1.85E-05 27.2
IWB23520 6A 12.5 1.85E-05 25.7
IWB2392 6A 12.5 6.41E-12 25.7
IWB26415 6A 12.5 1.85E-05 24.7
IWB43804 6A 12.5 1.85E-05 24.7
IWB9075 6A 12.5 3.00E-06 24.6
IWA7006 6A 12.8 2.06E-05 24.3
IWB22036 6A 12.9 4.64E-20 20.2
IWB10105 6A 13.5 5.80E-10 16.4
IWB11315 6A 13.5 7.37E-18 15.4
IWB23521 6A 13.5 5.98E-13 15.4
IWB26414 6A 13.5 6.11E-12 15.4
IWB35219 6A 13.5 1.18E-17 15.4
IWB43805 6A 13.5 1.98E-18 14.8
IWB43810 6A 13.5 1.85E-05 14.8
IWB58271 6A 13.5 2.78E-19 14.8
IWB60233 6A 13.5 6.11E-12 14.8
IWB6358 6A 13.5 1.85E-05 12.5
IWB66015 6A 13.5 6.11E-12 12.5
IWB67413 6A 13.5 7.37E-18 12.5
IWB67415 6A 13.5 8.35E-18 12.4
IWB72957 6A 13.5 1.98E-18 12.4
IWA272 6A 15.7 1.50E-04 12.4
IWB64917 6A 15.7 3.29E-04 11.9
IWB5029 6A 16.0 2.84E-15 11.8
IWB35595 6A 16.6 2.57E-12 10.0
IWB43808 6A 16.6 2.57E-12 9.1
IWB64918 6A 16.6 2.57E-12 7.6
IWB72956 6A 16.6 2.57E-12 6.5
IWA7913 6A 17.0 2.57E-12 6.1
IWB23519 6A 17.0 5.44E-10 6.0
IWA705 6A 20.0 5.56E-06 6.0
IWA4962 6A 21.1 4.26E-07 5.4
IWB31479 6A 21.1 4.72E-07 5.4
IWB48751 6A 21.1 1.01E-08 5.4
IWB20143 6A 22.0 2.44E-10 5.4
IWA4551 6A 22.9 6.94E-11 5.4
IWA4552 6A 22.9 1.11E-10 5.4
IWB22191 6A 22.9 6.67E-06 5.4
IWB28421 6A 22.9 2.44E-10 5.4
IWB50019 6A 22.9 2.44E-10 5.3
IWB28338 6A 23.0 6.67E-06 4.8
IWB1550 6A 25.5 2.19E-10 4.4
IWB22216 6A 25.5 5.42E-05 4.3
IWB30507 6A 25.5 2.19E-10 4.3
IWB40111 6A 25.5 5.36E-06 3.8
IWB52325 6A 25.5 2.06E-10 3.5
IWB64084.2 6B 9.8 3.68E-05 5.3
IWB11653.2 6B 14.5 2.10E-05 5.0
IWB14901 7A 124.3 2.72E-04 3.9
IWB48466 7A 217.0 8.24E-04 3.2
  1. a Chr ‘0’ indicates unmapped SNPs that were significant in the analysis
  2. b R2 Indicates the percent of phenotypic variation explained by the significant locus
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BMC Plant Biology

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