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Table 5 A core set of candidate genes with reported or putative functions in stress responses

From: Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes

Sequence ID

Description

BLAST E-valuea

Protein description at TAIR obtained by BLASTX with the Salix sequence

c34790_g1_i6

ap2-like ethylene-responsive transcription factor ail5

5.2 × 10−75

Encodes a member of the AP2 family of transcriptional regulators.

c19050_g1_i3

bzip transcription factor 60

4.2 × 10−144

Consists of a bZIP DNA binding domain followed by a putative transmembrane domain.

c25859_g1_i2

Chlorophyll a-b binding protein chloroplastic

6.5 × 10−161

Photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus.

c16933_g1_i1

Chlorophyll a-b binding chloroplastic

2.5 × 10−175

PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA.

c3652_g1_i1

Chlorophyll a-b binding protein chloroplastic

5.1 × 10−157

Encodes a component of the light harvesting complex associated with photosystem I.

c28579_g1_i2

Chloroplast stem-loop binding protein of 41 kda chloroplastic

0

Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein.

c22127_g1_i1

Dehydrin

5.0 × 10−93

Encodes a gene induced by low temperature and dehydration.

c16392_g1_i1

Ethylene-responsive transcription factor 4-like

4.1 × 10−42

Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4).

c20465_g2_i1

Heat shock transcription factor a2 isoform 1

1.3 × 10−57

Member of Heat Stress Transcription Factor (Hsf) family.

c23076_g1_i1

Heat stress transcription factor a-3

0

Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A.

c33073_g3_i1

Heat stress transcription factor a-6b

2.9 × 10−98

Member of Heat Stress Transcription Factor (Hsf) family.

c14799_g1_i1

Heat stress transcription factor a-6b-like

5.7 × 10−127

Member of Heat Stress Transcription Factor (Hsf) family

c32554_g10_i1

Heat stress transcription factor b-2b

5.1 × 10−96

Member of Heat Stress Transcription Factor (Hsf) family

c29038_g2_i1

Heat stress transcription factor c-1

5.8 × 10−166

Member of Heat Stress Transcription Factor (Hsf) family

c31828_g1_i3

Mitochondrial transcription termination factor family protein isoform 1

0

Encodes a putative mitochondrial transcription termination factor.

c6068_g1_i1

myb-like transcription factor partial

1.2 × 10−101

Putative transcription factor MYB108 (MYB108) mRNA.

c21976_g1_i1

myb transcription factor family protein

2.9 × 10−179

Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.

c35418_g2_i1

Photosystem ii 10 kda chloroplastic

8.9 × 10−75

Encodes for the 10 kDa PsbR subunit of photosystem II (PSII).

c26360_g1_i3

Photosystem ii stability assembly factor chloroplastic

0

Encodes a stability and/or assembly factor of photosystem II.

c34906_g2_i3

Probable wrky transcription factor 33

0

Member of the plant WRKY transcription factor family. Involved in response to various abiotic stresses.

c31974_g2_i2

Probable wrky transcription factor 40

1.7 × 10−178

Pathogen-induced transcription factor.

c26874_g1_i3

Probable wrky transcription factor 48

4.9 × 10−151

Encodes WRKY48, a member of the WRKY Transcription Factor. WRKY48 is a stress- and pathogen-induced transcriptional activator that represses plant basal defense.

c27657_g4_i1

Protein odorant1-like

0

Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.

c3736_g1_i1

Protochlorophyllide chloroplastic

1.1 × 10−82

Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.

c24362_g1_i1

Protochlorophyllide reductase-like

0

Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.

c21511_g1_i2

Stress enhanced protein chloroplastic

1.7 × 10−80

Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.

c34938_g1_i3

BZIP17, transcription factor

0

bZIP17 appears to regulate transcription as part of a salt and osmotic stress response.

c21535_g1_i1

Transcription factor myb108-like

7.1 × 10−150

Member of the R2R3 factor gene family.

  1. aE-value between the sequence and the best hit in the Viridiplantae subset of the NCBI nr database