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Table 1 Identification of TaCBL and TaCIPK gene families in wheat genome

From: Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)

Gene a

Gene names related to Chr.

Amino Acid

Exon

Chr.

Contigs

Gene Position Start end

Triticum urartu

Aegilops tauschii

GenBank Acc No.

TaCBL1 a

TaCBL1–A1 *

215

8

1AL

3974931

2941

6756

KD278069

JX2443002

TaCBL1–A2 P

 

KD162834

 

TaCBL1–B

1BL

3900149

166

3357

TaCBL1–D1

1DL

1737972

560

1484

KD512543

TaCBL1–D2

1DL

464815

15

 

KD578957

TaCBL2 a

TaCBL2–A

215

8

5AS

1464783

5151

93449

KD141203

JX243003

TaCBL2–B *

245

7

5BS

2281375

80

4667

TaCBL2–D

225

5DS

2741958

5680

9158

KD544824

TaCBL3 a

TaCIPK3–AP

KD241885

JX243004

TaCBL3–B *

8

4BS

4897686

4127

8100

TaCBL3–D

226

4DS

2274776

2834

7044

KD515143

TaCBL4 a

TaCBL4–A

1AL

3951410

100

1380

KD20084

JX243005

TaCBL4–B

7

1BL

3917583

1507

2702

TaCBL4–D1 *

218

1DL

2274485

1479

2868

KD597121

TaCBL4–D2

7

1DL

2273437

4080

5129

KD604528

TaCBL6 a

TaCBL6–A *

218

5

5AL

2189286

246

2332

KD045461

JX243006

TaCBL6–B

226

8

5BL

10906286

5260

8935

TaCBL6–D

5DL

4595540

1995

5159

KD546381

TaCBL7 a

TaCBL7–A

1AL

3887581

5948

7521

KD220101

JX243001

TaCBL7–B *

8

1BL

3897439

22549

24230

TaCBL7–D

213

8

1DL

2195979

3589

5243

KD592851

TaCBL9 a

TaCBL9–A1

296

8

3AL

4339532

1

784

KD258230

JX243010

TaCBL9–D1 P

3D

KD508651

TaCBL9–A2

5

3AS

3303239

2125

4252

KD217616

TaCBL9–D2 P

296

KD546760

TaCBL9–B1 *

296

9

3B

10535092

2016

4459

TaCBL9–B2

3B

10578811

5421

7996

TaCBL9–B3

3B

10423444

3743

5534

TaCIPK2 a

TaCIPK2–A

1

2AS

1136699

1058

2612

KD178374

KJ561791

TaCIPK2–B

452

1

2BS

5209173

4420

6031

TaCIPK2–D *

452

1

2DS

5352995

3439

6170

KD537702

TaCIPK3 a

TaCIPK3–A

456

14

2AS

5278308

778

4232

KD224079

KJ561800

TaCIPK3–B

447

14

2BS

5215259

1889

4792

TaCIPK3–D *

447

14

2DS

5388639

6194

9544

KD551511

TaCIPK4

TaCIPK4–B

448

2

2

5BS

2276618

1805

3100

TaCIPK4–D

432

5DS

2735985

15903

17161

KD505215

TaCIPK5 a

TaCIPK5–A

433

1

3AS

3302816

1652

3448

KD141920

KJ561802

TaCIPK5–B

466

1

3B

10642252

4923

6712

TaCIPK5–D *

464

3DS

1035659

1

1176

KD508285

TaCIPK6

TaCIPK6–A P

  

KD207883

TaCIPK6–D P

  

KD557345

TaCIPK7 a

TaCIPK7–A1 P

  

KD036546

 

KJ561803

TaCIPK7–A2 P

  

KD051070

 

TaCIPK7–A3 P

  

KD103566

 

TaCIPK7–B

1

5BL

10732661

4349

5764

TaCIPK7–D P

431

  

KD522041.1

TaCIPK8 a

TaCIPK8–B

3

3B

10524427

1670

3978

KJ561804

TaCIPK8–D

464

3DL

6956205

367

2132

TaCIPK9

TaCIPK9–A

14

5AL

1668033

412

3585

KD006963

AK332473

TaCIPK9–B

446

4BL

6995603

4780

8912

TaCIPK9–D

15

4DL

14472121

  

KD554016

TaCIPK10 a

TaCIPK10–A

445

1

4AS

5974107

2247

3728

KD248893

KJ561787

TaCIPK10–B

384

1

4BL

7036526

5067

6516

TaCIPK10–D *

439

1

4DL

14429928

  

KD540780

TaCIPK11 a

TaCIPK11–A

438

1

3AL

2838468

1233

3144

KD051997

KJ561788

TaCIPK11–B1 *

507

1

3B

10507835

1

1663

TaCIPK11–B2

507

3B

10507836

1

1544

TaCIPK11–D

1

3DL

6897880

8953

10856

KD509836

TaCIPK11–D2 P

507

     

KD556601

TaCIPK12

TaCIPK12–A

2

1AL

3875215

1

875

KD167973

TaCIPK12–B

1

1BL

3828145

1

326

TaCIPK12–D

1

1DL

2112699

1

418

KD507283

TaCIPK13

TaCIPK13–B

1

3B

10753103

  

TaCIPK13–D P

KD502264

TaCIPK14

TaCIPK14–A

1

4AL

7147326

  

KD239100

JX879754

TaCIPK14–B

449

1

4BS

4951408

11612

13239

TaCIPK14–D

444

1

4DS

2283949

3085

4712

KD546797

TaIPK15 a

TaIPK15–A

449

1

5AL

1668033

1866

3335

KJ561789

TaCIPK15–B

1

5BL

10796477

2838

4331

TaCIPK15–D *

438

5DL

4490016

1021

2355

KD560960

TaCIPK16

TaCIPK16–A P

KD143696

AK331419

TaCIPK16–B

2

5BL

10860020

4595

6233

TaCIPK16–D P

447

KD721304

TaCIPK17 a

TaCIPK17–A1

6

1AS

3313233

19

2337

KD250230

KJ561790

TaCIPK17–A2

11

1AS

3259469

1075

3521

KD132920

TaCIPK17–B1 *

12

1BS

1265003

1916

5673

TaCIPK17–B2

466

12

1BS

3424219

1678

5957

TaCIPK17–D1

466

1DS

1916039

456

3542

KD530641

TaCIPK17–D2

1DS

1890755

1

3079

KD563756

TaCIPK17–D3

11

1DS

271737

999

3311

KD589116

TaCIPK19 a

TaCIPK19–A P

KD117636

JX234011

TaCIPK19–B1

2

3B

10573976

10157

13650

TaCIPK19–B2

483

1

3B

10753103

13446

14093

TaCIPK20

TaCIPK20–A

525

4

6AS

4406549

  

KD224235

TaCIPK20–B

12

6BS

2936057

  

TaCIPK20–D

11

6DS

2096196

  

KD544165

TaCIPK21 a

TaCIPK21–A *

12

2AS

5304926

1845

6080

KD277172

KJ561792

TaCIPK21–B

451

2BS

5197551

4370

8637

TaCIPK21–D

2DS

5319123

2007

4463

KD511088

TaCIPK22 a

TaCIPK22–A

2AL

6383902

1

934

KD203757

KJ561793

TaCIPK22–B1

2BL

7988831

2848

4399

TaCIPK22–B2

2BL

8033849

3684

4533

TaCIPK22–B3

2BL

7949729

3040

4484

TaCIPK22–D1

1

2DL

9860188

4959

6607

KD500669

TaCIPK22–D2 *

433

2DL

9908802

3988

4888

TaCIPK23

TaCIPK23–A

14

2AL

6369709

442

4149

KD007171

JX243012

TaCIPK23–B

452

14

2BL

7939869

5925

8812

TaCIPK23–D

462

14

2DL

9894674

10517

14199

KD502068

TaCIPK24 a

TaCIPK24–A

462

7AL

4552082

7689

11571

KD185370

KJ561794

TaCIPK24–B1 *

7BL

6743884

3133

8220

TaCIPK24–B2

7BL

6725100

299

1430

TaCIPK24–D

14

7DL

3369425

6709

12113

KD554191

TaCIPK25 a

TaCIPK25–A

446

7AL

4557464

1

906

KD203605

KJ561795

TaCIPK25–D *

7DL

3315123

3089

4703

KD578984

TaCIPK26 a

TaCIPK26–A

1

6AS

4399246

659

2242

KJ561796

TaCIPK26–B

481

6BS

1542240

652

2262

TaCIPK26–D *

1

6DS

32939

832

2285

KD556601

TaCIPK27 a

TaCIPK27–B1 *

486

5BL

10894042

2308

3872

KJ561797

TaCIPK27–B2

1

5BL

10894043

2308

3872

TaCIPK28 a

TaCIPK28–A *

447

1

1AL

2752572

4061

5848

KD259754

KJ561798

TaCIPK28–B

472

1

1BL

3799843

6758

8542

TaCIPK28–D

472

1

1DL

2281163

487

2269

KD506845

TaCIPK29 a

TaCIPK29–A P

472

 

KD176996

JX243013

TaCIPK29–B *

1

2BS

5246729

19006

20606

TaCIPK29–D P

436

KD506473

TaCIPK30

TaCIPK30–A

1

3AL

4303945

2592

3265

KD117636

AK330597

TaCIPK31 a

TaCIPK31–A

478

14

4AS

5932853

800

4412

KD170661

KJ561799

TaCIPK31–B *

449

15

4BL

7038614

5874

10593

TaCIPK31–D P

449

KD566562

TaCIPK32 a

TaCIPK32–AP

KD060684

KJ561801

TaCIPK32–B *

14

4BS

4875486

20714

24433

TaCIPK32–D

439

14

4DS

2325367

3990

77792

KD929083

  1. “–” represents no data available. “P” represents the potential genes were not identified in this work. “a” represents those genes that were amplified in this study. “*” represents those amplified genes that were identified as transcripts from indicated chromosomes