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Table 3 Photosynthesis related genes identified on each contrast

From: Physiological and transcriptional analyses of developmental stages along sugarcane leaf

GeneID

Annotation

LogFC

Contrast B-B0

SP803280_c89172_g1

NADP-dependent malic enzyme

-1.28

SP803280_c102133_g1

Fructose-bisphosphate aldolase, chloroplastic

1.36

Contrast M-B

SP803280_c92945_g1

Phosphoenolpyruvate carboxylase kinase 1

-1.70

SP803280_c92961_g1

Phosphoenolpyruvate carboxylase kinase 1

-2.16

Contrast T-M

SP803280_c110449_g1

Ribose-5-phosphate isomerase 4, chloroplastic

-3.87

SP803280_c67360_g1

Photosystem II reaction center W protein, chloroplastic

-3.62

SP803280_c95106_g1

Chlorophyll a-b binding protein, chloroplastic

-3.37

SP803280_c92288_g1

NADP-dependent malic enzyme, chloroplastic

-2.87

SP803280_c102650_g1

Magnesium-chelatase subunit ChlI, chloroplastic

-2.38

SP803280_c99238_g1

Chlorophyll a-b binding protein CP24 10B, chloroplastic

-2.33

SP803280_c104535_g4

Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic

-2.32

SP803280_c103134_g1

Phosphoenolpyruvate carboxylase 3

-2.28

SP803280_c80781_g1

Photosystem I reaction center subunit VI, chloroplastic

-2.27

SP803280_c97299_g1

Carbonic anhydrase, chloroplastic

-2.19

SP803280_c92767_g1

Ribulose bisphosphate carboxylase small chain, chloroplastic

-2.17

SP803280_c92767_g1

Ribulose bisphosphate carboxylase small chain, chloroplastic

-2.17

SP803280_c96992_g1

Photosystem I reaction center subunit XI, chloroplastic

-2.04

SP803280_c94064_g1

Photosystem II reaction center PSB28 protein, chloroplastic

-2.03

SP803280_c86157_g1

Chlorophyll a-b binding protein 7, chloroplastic

-1.99

SP803280_c104447_g1

Photosystem II core complex proteins psbY, chloroplastic

-1.99

SP803280_c88331_g1

Ferredoxin-thioredoxin reductase, variable chain

-1.74

SP803280_c87990_g4

ATP synthase delta chain, chloroplastic

-1.73

SP803280_c100740_g1

Photosystem II repair protein PSB27-H1, chloroplastic

-1.65

SP803280_c89062_g1

Photosystem I reaction center subunit III, chloroplastic

-1.52

SP803280_c95984_g2

Photosystem II core complex proteins psbY, chloroplastic

-0.98

SP803280_c97299_g2

Carbonic anhydrase, chloroplastic

-0.73

SP803280_c20755_g1

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic

-0.63

SP803280_c89172_g1

NADP-dependent malic enzyme

1.18

SP803280_c108467_g2

Phosphoenolpyruvate carboxylase 1

1.26

SP803280_c57883_g1

Phosphoenolpyruvate carboxylase 1

1.29

SP803280_c25925_g1

Phosphoenolpyruvate carboxylase 1

1.54

SP803280_c89145_g1

Phosphoenolpyruvate carboxylase 1

1.88

  1. LogFC: Log Fold Change. Positive LogFC indicates more expression at the more basal segment of the contrast; negative LogFC indicates more expression at the most distal segment of the contrast