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Table 4 Significant marker gene expression associations (p <0.001) with positions of eQTL

From: Expression profiling of genes involved in drought stress and leaf senescence in juvenile barley

 

Gene (log ∆∆Ct)

Markerb

Chr.b

Pos. in cMb

F value

p value

-log p (LOD)

R2 in %

Drought stress genes

A1

SCRI_RS_134358

5H

149.9

7.45

8.86E-04

3.05

9.5

A1

SCRI_RS_165400

5H

150.1

7.45

8.86E-04

3.05

9.5

GAD3

BOPA2_12_31177

1H

38.0

7.81

6.03E-04

3.22

8.9

GAD3

BOPA1_4403-885

3H

142.1

12.09

6.67E-04

3.18

6.9

P5CS2

BOPA1_4403-885

3H

142.1

11.31

9.84E-04

3.40

7.5

Leaf senescence genes

Contig7437

BOPA1_4403-885

3H

142.1

7.36

9.05E-04

3.01

7.1

GSII

BOPA2_12_30065

7H

40.4

11.36

9.60E-04

3.04

9.5

hv_36467

BOPA1_6547-1363

1H

111.8

8.11

4.58E-04

3.02

7.9

hv_36467

BOPA2_12_31461

2H

131.9

13.14

4.00E-04

3.34

11.2

pHvNF-Y5a

SCRI_RS_152393

6H

64.4

11.48

9.09E-04

3.04

7.8

pHvNF-Y5a

SCRI_RS_194841

7H

81.5

12.91

4.49E-04

3.35

8.7

Genes out of GWASa

AVP1

SCRI_RS_140294

5H

62.5

13.46

3.42E-04

3.47

9.1

ETFQO

BOPA1_10126-999

3H

53.3

7.44

8.37E-04

3.08

10.1

ETFQO

SCRI_RS_181376

5H

143.1

8.34

3.86E-04

3.41

11.5

TRIUR3

BOPA1_4392-450

5H

44.5

7.64

7.07E-04

3.15

9.9

TRIUR3

BOPA2_12_30717

5H

44.5

7.64

7.07E-04

3.15

9.9

TRIUR3

SCRI_RS_41519

5H

44.5

7.64

7.07E-04

3.15

9.9

TRIUR3

SCRI_RS_161614

5H

139.7

15.17

1.51E-04

3.82

9.8

  1. aGenes coding for proteins identified by BlastX of significant marker sequences out of a previous genome wide association study (GWAS) by Wehner et al. [20]
  2. bMarker positions are based on Comadran et al. [101]