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Table 5 Positions of the selected genes based on the barley Morex-contigs and their mode of action

From: Expression profiling of genes involved in drought stress and leaf senescence in juvenile barley

 

Gene

POPSEQb,c

Chr.b

cMb

Identity in %c

eQTLd

Drought stress genes

A1

morex_contig_38178

5H

156.9

76

cis

GAD3

morex_contig_790741

1H

42.0

81

cis

GAD3

morex_contig_135241

3H

147.0

75

cis

P5CS2

morex_contig_2549060

3H

30.2

76

trans

Leaf senescence genes

Contig7437

morex_contig_47765

4H

54.3

94

trans

GSII

morex_contig_274546

7H

70.8

92

trans

hv_36467

morex_contig_138818

1H

132.4

91

trans

hv_36467

morex_contig_458133

2H

58.0

81

trans

pHvNF-Y5a

morex_contig_244610

6H

76.0

100

trans

pHvNF-Y5a

morex_contig_60611

7H

70.8

95

cis

Genes out of GWASa

AVP1

morex_contig_80803

5H

44.1

75

trans

ETFQO

morex_contig_6218

3H

51.8

95

cis

ETFQO

morex_contig_1570014

5H

152.4

100

cis

TRIUR3

morex_contig_81592

5H

42.0

88

cis

TRIUR3

morex_contig_160473

5H

129.9

71

cis

  1. aGenes coding for proteins identified by BlastX of significant marker sequences out of a previous genome wide association study (GWAS) by Wehner et al. [20]
  2. bGene positions are based on POPSEQ map (ibsc 2012)
  3. cMorex contigs and identity comes out Blastn of the gene sequences against the Morex genome (ibsc 2012)
  4. d cis eQTL coincide with the location of the underlying gene (position <10 cM), whereas trans eQTL are located in other regions of the genome Druka et al. [11]