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Table 2 Summary of the sequence data from Illumina sequencing

From: Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

Library

Raw reads

Clean reads

Clean bases (Gb)

Error (%)

Q20 (%)

Q30 (%)

GC content (%)

R_CK1_1

57130486

54867978

5.49

0.03

97.20

91.78

44.37

R_CK1_2

54713736

52859150

5.29

0.03

97.40

92.08

45.25

R_T1_1

55671406

55671406

5.57

0.03

97.26

91.79

45.19

R_T1_2

52776632

52776632

5.28

0.03

97.32

91.95

44.87

R_CK2_1

70575134

68662776

6.87

0.03

97.59

92.59

44.90

R_CK2_2

61656004

59697968

5.97

0.03

97.59

92.61

44.86

R_T2_1

62462134

62462134

6.25

0.03

97.66

92.77

44.40

R_T2_2

53206474

53206474

5.32

0.04

96.52

90.20

44.78

R_CK3_1

61917966

59434146

5.94

0.04

96.31

89.28

45.25

R_CK3_2

66649516

63956168

6.40

0.04

96.21

88.97

45.44

R_T3_1

23224306

23224306

2.32

0.05

94.80

87.41

46.27

R_T3_2

18549458

18549458

1.85

0.05

94.71

86.89

46.11

R-Total

638533252

625368596

62.53

    

S_CK1_1

58045728

56103334

5.61

0.03

97.24

91.72

45.03

S_CK1_2

63689306

61798978

6.18

0.03

97.32

91.96

44.61

S_T1_1

57998512

57998512

5.80

0.03

97.27

91.85

44.24

S_T1_2

59669162

59669162

5.97

0.03

97.29

91.89

44.35

S_CK2_1

74137916

72280900

7.23

0.03

97.62

92.66

44.80

S_CK2_2

56939790

54259514

5.43

0.04

96.22

89.11

45.46

S_T2_1

49120232

49120232

4.91

0.04

96.27

89.28

44.59

S_T2_2

47405260

47405260

4.74

0.04

96.24

89.28

44.20

S_CK3_1

54341696

51982378

5.20

0.04

96.35

89.38

46.04

S_CK3_2

62599834

59709106

5.97

0.04

96.40

89.89

45.88

S_T3_1

48638388

48638388

4.86

0.04

96.21

89.17

44.96

S_T3_2

42948026

42948026

4.29

0.03

97.23

91.38

44.78

S-Total

675533850

661913790

66.19

    
  1. R_CK1, R_CK2, and R_CK3: Zhonghua 6 without inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  2. R_T1, R_T2, and R_T3: Zhonghua 6 with inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  3. S_CK1, S_CK2, and S_CK3: Zhonghua 12 without inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  4. S_T1, S_T2, and S_T3: Zhonghua 12 with inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  5. Q20: The percentage of bases with a Phred value >20
  6. Q30: The percentage of bases with a Phred value >30