Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

Table 3 The detail information of the high-density genetic map

Chromosome number	Marker number	Total distance	Average distance	Largest gap	Number of gap (>5 cM)	Number of SDMs	Percentage of SDMs	X²_value	P_value	SDR region	Number of RHs
Chr01	297	140.42	0.47	4.48	0	82	27.61 %	2.50	0.28	9	32
Chr02	180	136.88	0.76	5.42	1	12	6.67 %	1.36	0.44	1	35
Chr03	218	159.93	0.73	4.15	0	47	21.56 %	2.36	0.40	4	0
Chr04	574	142.01	0.25	3.61	0	27	4.70 %	1.14	0.43	0	86
Chr05	434	242.56	0.56	4.22	0	106	24.42 %	2.46	0.29	10	0
Chr06	101	92.62	0.92	4.76	0	26	25.74 %	2.37	0.43	1	16
Chr07	318	132.96	0.42	3.56	0	36	11.32 %	1.58	0.35	1	1
Chr08	56	45.12	0.81	3.56	0	13	23.21 %	2.32	0.26	0	0
Chr09	274	156.33	0.57	5.07	1	60	21.90 %	2.30	0.32	5	55
Chr10	133	113.33	0.85	6.69	3	17	12.78 %	1.86	0.32	1	32
Chr11	88	112.62	1.28	5.71	1	24	27.27 %	2.50	0.30	3	0
Chr12	273	178.26	0.65	5.07	1	85	31.14 %	2.85	0.28	8	37
Chr13	604	185.33	0.31	4.15	0	44	7.28 %	1.43	0.40	1	106
Chr14	408	173.03	0.42	4.46	0	238	58.33 %	4.98	0.18	18	67
Chr15	29	41.39	1.43	3.56	0	8	27.59 %	2.76	0.33	1	1
Chr16	399	178.54	0.45	3.61	0	152	38.10 %	3.38	0.28	13	0
Chr17	102	101.64	1	4.79	0	9	8.82 %	1.28	0.43	0	29
Chr18	172	136.45	0.79	5.07	1	43	25.00 %	2.67	0.27	3	1
Chr19	109	94.13	0.86	4.76	0	18	16.51 %	2.10	0.35	2	24
Chr20	60	48.44	0.81	4.15	0	9	15.00 %	2.27	0.28	0	11
Chr21	174	163.73	0.94	5.71	1	29	16.67 %	1.77	0.43	2	40
Chr22	75	65.91	0.88	4.46	0	4	5.33 %	1.22	0.50	0	14
Chr23	142	127.61	0.9	4.76	0	31	21.83 %	2.26	0.32	3	36
Chr24	60	76.99	1.28	4.76	0	6	10.00 %	1.39	0.47	0	12
Chr25	166	124.21	0.75	5.39	1	84	50.60 %	4.62	0.16	6	39
Chr26	75	88.93	1.19	7.02	1	15	20.00 %	2.13	0.35	1	19
Total	5521	3259.37	0.78	7.02	11	1225	--	--	--	93	693

ISSN: 1471-2229