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Table 5 The markers and the candidate genes in the confidence intervals of the stable QTLs

From: Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

QTL name

Marker interval (P < 0.01)

Gene interval

Physical distance interval

Number of markers

Number of genes

qBW-chr01-1

CRI-SNP161-CRI-SNP168

CRI-SNP161-CRI-SNP166

21363529–22191102

5

8

qBW-chr02-3

CRI-SNP511-CRI-SNP512

CRI-SNP511-CRI-SNP512

2428231–2465227

2

None

qBW-chr03-1

CRI-SNP-1241-CRI-SNP-1235

CRI-SNP-1241-CRI-SNP-1235

93109282–93363954

6

3

qBW-chr05-10

CRI-SNP-2294-CRI-SNP-2279

CRI-SNP-2294-CRI-SNP-2281

11840100–12807341

11

51

qBW-chr07-1

CRI-SNP-5633-CRI-SNP5596

CRI-SNP-5633-CRI-SNP5596

41686619–43069600

18

15

qBW-chr07-4

CRI-SNP5490-CRI-SNP5481

CRI-SNP5490-CRI-SNP5481

26629060–26694814

10

1

qBW-chr07-6

CRI-SNP5452-CRI-SNP-5441

CRI-SNP5452-CRI-SNP-5441

26153119–26450470

7

11

qBW-chr09-6

CRI-SNP6432-CRI-SNP6455

CRI-SNP6432-CRI-SNP6455

55762226–57316457

15

28

qBW-chr13-4

CRI-SNP8317-CRI-SNP-8338

CRI-SNP8317-CRI-SNP-8338

5157441–5989840

13

34

qBW-chr13-7

CRI-SNP8690-CRI-SNP8726

CRI-SNP8690-CRI-SNP8726

41941944–43033838

26

10

qBW-chr16-4

CRI-SNP12271-CRI-SNP12560

CRI-SNP12483-CRI-SNP12560

15223879–15984482

19

37

qBW-chr22-3

CRI-SNP10333-CRI-SNP10341

CRI-SNP10333-CRI-SNP10341

47103662–47711028

8

39

qBW-chr23-5

CRI-SNP13840-CRI-SNP13862

CRI-SNP13840-CRI-SNP13862

43266988–43944781

7

65

qBW-chr25-5

CRI-SNP10565-CRI-SNP10569

CRI-SNP10565-CRI-SNP10569

1826714–2154361

5

32

qBW-chr25-6

CRI-SNP10569-CRI-SNP10568

CRI-SNP10569-CRI-SNP10568

2129899–2154631

2

1

qBW-chr25-7

CRI-SNP10592-CRI-SNP10614

CRI-SNP10592-CRI-SNP10614

2861896–3087983

10

10