Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

Kouzai, Yusuke; Kimura, Mamiko; Yamanaka, Yurie; Watanabe, Megumi; Matsui, Hidenori; Yamamoto, Mikihiro; Ichinose, Yuki; Toyoda, Kazuhiro; Onda, Yoshihiko; Mochida, Keiichi; Noutoshi, Yoshiteru

doi:10.1186/s12870-016-0749-9

Table 1 Candidate marker genes selected in this study for SA, JA and ET in Brachypodium

From: Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

ID	Name	Description in database	Rice homolog	Arabidopsis homolog	Ref
SA-related genes
Bradi2g05870	NPR1	Regulatory protein NPR1-like	OsNPR1:Os01g0194300	NPR1 : At1g64280	[24]
Bradi2g30695	WRKY45-1	Uncharacterized protein	OsWRKY45-1 : Os05g0322900	AtWRKY70 : At3g56400	[24]
Bradi2g44270	WRKY45-2	WRKY transcription factor 70-like	OsWRKY45-1 : Os05g0322900	AtWRKY70 : At3g56400	[24]
Bradi4g35356	SAGT1	UDP-glycosyltrasferase 74 F1-like	OsSGT1 : Os09g0518200	UGT superfamily : At1g05675	[29]
Bradi2g22410	AGA	Alanine-glyoxylate aminotransferase 2 homolog 3	Osh36 : Os05g0475400	AtPYD4 : At3g08860	[29]
Bradi1g53527	UGT76-1	UDP-glycosyltrasferase 76C2-like	no symbol : Os07g0241500	UGT76B1 : At3g11340	[30]
Bradi1g53540	UGT76-2	UDP-glycosyltrasferase 76C2-like	no symbol : Os07g0241500	UGT76B1 : At3g11340	[30]
Bradi1g53550	UGT76-3	UDP-glycosyltrasferase 76 F1-like	no symbol : Os07g0241500	UGT76B1 : At3g11340	[30]
Bradi4g41410	UGT76-4	UDP-glycosyltrasferase 76C2-like	no symbol : Os07g0241500	UGT76B1 : At3g11340	[30]
Bradi1g11940	UGT74-1	Indole-3-acetate beta-glucosyltransferase-like	OsIAGLU : Os03g0693600	UGT74F2 : At2G43820	[30]
Bradi4g35350	UGT74-2	UDP-glycosyltrasferase 74 F2-like	no symbol : Os09g0517900	UGT74F2 : At2G43820	[30]
Bradi5g03380	UGT74-3	UDP-glycosyltrasferase 74 F2-like	no symbol : Os04g0206500	UGT74F2 : At2G43820	[30]
JA-related genes
Bradi1g69330	AOS	Allene oxide synthase 2-like	OsAOS2 : Os03g0225900	AtAOS2 : At5g42650	[32–34]
Bradi1g11670	LOX	Linoleate 9S-lipoxygenase 4-like	OsLOX1 : Os03g0700700	AtLOX5 : At3g22400	[32–34]
ET-related genes
Bradi2g52370	ERF	Ethylene-responsive transcription factor 4-like	OsERF3 : Os01g0797600	AtERF9 : At5g44210	[43]
Bradi1g63780	EIN3	Ethylene insensitive 3-like	no symbol : Os03g0324300	AtEIN3 : At3g20770	[42]
Bradi1g49966	ACC	Aminotransferase ACS10-like	OsACS6 : Os06g0130400	AtACS10 : At1g62960	[44]
Bradi2g34400	TAR1	Tryptophan aminotransferase-related protein 2-like	OsTAR1 : Os05g0169300	AtTAR2 : At4g24670	[21]
Bradi2g04290	TAR2	Tryptophan aminotransferase-related protein 2-like	OsTAR1 : Os05g0169300	AtTAR2 : At4g24670	[21]
Bradi3g37300	4CL	4-Coumarate:CoA ligase 5-like	Os4CL5 : Os08g0448000	At4CL1 : At1g51680	[35, 37–39]
Bradi3g48840	PAL	Phenylalanine ammonia-lyase-like	OsPAL1 : Os02g0627100	AtPAL1 : At2g37040	[35, 37–39]
Bradi1g33540	PR5	Thaumatin-like protein-like	no symbol : Os06g0691200	no symbol : At1g73620	[45, 47]
Bradi4g05040	PBZ1	Major allergen Api g 1-like	PBZ1-like : Os12g0555000	no hit	[45, 47]

Twenty-three Brachypodium genes were identified by similarity search using known phytohormone marker genes of rice or Arabidopsis as queries. Gene IDs, relationships to phytohormone, expedient names without functional confirmation, descriptions in the database, corresponding homologs in rice or Arabidopsis, and references are listed

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ISSN: 1471-2229

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