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Table 2 Consensus QTL obtained for the six silique related traits

From: Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

QTLa

Chr.b

LODc

PVE d

Positione

CI.f

Add.g

Environmenth

cqSL-A5-1

A5

8.09

11.04

13.41

11.4-18.9

-0.30

10DL

cqSL-A5-2

A5

5.34-6.31

8.57-9.17

26.4

23.25-29.56

-0.27 ~ -0.22

10DL/11DL/13WH

cqSL-A6-1

A6

3.56-7.24

5.28-14.36

41.33

37.59-45.06

-0.29 ~ -0.21

10DL/13WH

cqSL-A6-2

A6

4.53

5.78

75.11

65.8-78.3

0.25

11DL

cqSL-A6-3

A6

4.32

5.63

87.61

78.3-91.7

0.22

11DL

cqSL-A6-4

A6

2.94

3.43

95.21

93.4-114.2

0.17

11DL

cqSL-C1

C1

2.6

3.68

0.01

0-10.8

0.14

13WH

cqSL-C5

C5

3.81

4.68

70.51

69.1-79.5

0.19

11DL

cqSL-C6-1

C6

2.86-5.21

4.8-7.39

57.02

54.85-59.19

0.20 ~ 0.39

10DL/11DL/12DL

cqSL-C6-2

C6

5.8

7.37

67.81

67.2-71

0.38

11DL

cqSL-C6-3

C6

3.76

6.35

62.71

60.7-65

0.26

12DL

cqSB-A2

A2

3.01

3.44

3.21

0-22.2

-0.1

10DL

cqSB-A3-1

A3

3.24

4.24

43.11

29.6-51.6

0.13

11DL

cqSB-A3-2

A3

3.91

4.76

136.91

126.8-139.4

0.13

12DL

cqSB-A3-3

A3

3.83

4.65

142.31

141.8-147.7

0.13

12DL

cqSB-A4

A4

4.12

5.18

54.51

54.3-54.9

0.13

10DL

cqSB-A6-1

A6

4.26

5.62

56.21

54.9-64.3

-0.13

10DL

cqSB-A6-2

A6

3.87-5.76

4.73-7.09

69.31

67.31-71.3

-0.15 ~ -0.13

10DL/12DL

cqSB-A6-3

A6

5.81

7.16

78.31

71.1-84.3

-0.15

10DL

cqSB-A7-1

A7

3.52

4.21

2.91

0-7

0.11

10DL

cqSB-A7-2

A7

3.24-5.75

3.99-7.38

14.15

10.51-17.79

0.11 ~ 0.16

10DL/11DL

cqSB-A9

A9

5

6.69

64.61

50.6-68.9

-0.15

11DL

cqSB-C6-1

C6

7.43-9.61

9.42-15.06

61.43

60.47-62.39

0.20 ~ 0.27

10DL/11DL/12DL

cqSB-C6-2

C6

7.96-11.25

9.92-14.84

70.59

68.69-72.5

0.20 ~ 0.26

10DL/11DL/12DL

cqSB-C7

C7

3.22

4.1

29.11

26.4-49.6

0.11

10DL

cqST-A3-1

A3

7.35

9.13

139.41

136.9-141.3

0.1

11DL

cqST-A3-2

A3

3.25

4.89

149.31

145.7-151.3

0.08

12DL

cqST-A5-1

A5

6.08

7.52

9.11

1-18.1

-0.1

11DL

cqST-A5-2

A5

4.49

6.21

52.21

48.8-58.4

0.09

11DL

cqST-A6

A6

3.08

3.9

82.31

69.3-93.4

-0.07

11DL

cqST-A9-1

A9

7.37

10.41

38.01

29.6-44.7

-0.1

10DL

cqST-A9-2

A9

5.75

7.15

68.91

61.3-69.2

-0.1

11DL

cqST-A10

A10

3.14

4.18

46.61

34.1-60.4

-0.07

10DL

cqST-C6-1

C6

4.84

5.83

60.71

55.6-62.7

0.09

11DL

cqST-C6-2

C6

3.93

4.74

67.21

65-68.6

0.08

11DL

cqST-C6-3

C6

3.01-4.31

4.14-5.81

71.31

69.95-72.66

0.08 ~ 0.09

11DL/12DL

cqST-C9-1

C9

2.83-4.43

3.26-6.16

26.29

19.22-33.37

-0.09 ~ -0.08

10DL/11DL

cqST-C9-2

C9

4.56

7.58

34.71

28.7-44.7

-0.06

10DL

cqSPS-A1

A1

3.16

4.69

53.21

41-62.9

0.94

13WH

cqSPS-A2

A2

3.69

5.52

48.51

39.3-58

-1.51

12DL

cqSPS-A5

A5

3.46

5.47

48.81

45.4-54.6

-0.99

13WH

cqSPS-C6-1

C6

6.08

9.82

57.31

55.2-59.3

2.12

12DL

cqSPS-C6-2

C6

6.74

9.26

69.41

69.3-71.0

2.16

12DL

cqSPS-C6-3

C6

2.87-7.99

4.32-11.16

71.01

70.22-71.8

1.56 ~ 2.02

11DL/12DL/13WH

cqSV-A3

A3

3.59

4.79

136.91

125.9-140.1

0.04

12DL

cqSV-A5-1

A5

5.62-6.43

6.51-8.48

8.78

2.76-14.81

-0.05

10DL/11DL

cqSV-A5-2

A5

3.99

5.26

26.81

20.8-29.9

-0.04

10DL

cqSV-A6-1

A6

2.73

3.47

47.71

37.4-52.2

-0.04

11DL

cqSV-A6-2

A6

2.93-3.34

3.79-3.86

50.9

49.47-52.33

-0.04

10DL/12DL

cqSV-A6-3

A6

2.60-2.65

3.33-3.43

56.2

53.47-58.92

-0.03

10DL/11DL

cqSV-C1

C1

3.38

4.36

77.91

75.9-79.3

-0.04

11DL

cqSV-C6-1

C6

6.2

7.59

55.31

54.8-60.7

0.05

10DL

cqSV-C6-2

C6

5.71

8.15

65.71

61.7-68.6

0.06

12DL

cqSV-C6-3

C6

6.09-8.47

8.26-10.39

70.16

67.97-72.34

0.06-0.07

10DL/11DL/12DL

cqSV-C6-4

C6

6.2

8.25

85.11

77.1-87.1

0.05

10DL

cqSD-C4

C4

3.03

4.36

27.41

18.4-28.7

0.15

10DL

cqSD-C6-1

C6

3.12

4.47

66.21

64.2-67.8

0.15

11DL

cqSD-C6-2

C6

2.98-4.39

4.28-6.15

70.02

68.52-71.52

0.17

11DL/12DL

cqSD-C9-1

C9

2.87-4.62

5.17-6.71

19.41

18.6-25.3

0.27

10DL

cqSD-C9-2

C9

2.87

5.17

25.11

19.4-40.2

0.16

13WH

  1. aQTL name, two letters followed the ‘cq’ indicate different traits (SL; silique length, SB; silique breadth, ST; silique thickness, SPS; seed number per silique, SV; silique volume, SD; seed density); bLocation of QTLs; c LOD score of consensus QTLs; dPhenotype variation explanation of QTLs; ePeak position; fConfidence interval; g Additive effects; hEnvironments of consensus QTLs appeared