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Table 2 Consensus QTL obtained for the six silique related traits

From: Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

QTLa Chr.b LODc PVE d Positione CI.f Add.g Environmenth
cqSL-A5-1 A5 8.09 11.04 13.41 11.4-18.9 -0.30 10DL
cqSL-A5-2 A5 5.34-6.31 8.57-9.17 26.4 23.25-29.56 -0.27 ~ -0.22 10DL/11DL/13WH
cqSL-A6-1 A6 3.56-7.24 5.28-14.36 41.33 37.59-45.06 -0.29 ~ -0.21 10DL/13WH
cqSL-A6-2 A6 4.53 5.78 75.11 65.8-78.3 0.25 11DL
cqSL-A6-3 A6 4.32 5.63 87.61 78.3-91.7 0.22 11DL
cqSL-A6-4 A6 2.94 3.43 95.21 93.4-114.2 0.17 11DL
cqSL-C1 C1 2.6 3.68 0.01 0-10.8 0.14 13WH
cqSL-C5 C5 3.81 4.68 70.51 69.1-79.5 0.19 11DL
cqSL-C6-1 C6 2.86-5.21 4.8-7.39 57.02 54.85-59.19 0.20 ~ 0.39 10DL/11DL/12DL
cqSL-C6-2 C6 5.8 7.37 67.81 67.2-71 0.38 11DL
cqSL-C6-3 C6 3.76 6.35 62.71 60.7-65 0.26 12DL
cqSB-A2 A2 3.01 3.44 3.21 0-22.2 -0.1 10DL
cqSB-A3-1 A3 3.24 4.24 43.11 29.6-51.6 0.13 11DL
cqSB-A3-2 A3 3.91 4.76 136.91 126.8-139.4 0.13 12DL
cqSB-A3-3 A3 3.83 4.65 142.31 141.8-147.7 0.13 12DL
cqSB-A4 A4 4.12 5.18 54.51 54.3-54.9 0.13 10DL
cqSB-A6-1 A6 4.26 5.62 56.21 54.9-64.3 -0.13 10DL
cqSB-A6-2 A6 3.87-5.76 4.73-7.09 69.31 67.31-71.3 -0.15 ~ -0.13 10DL/12DL
cqSB-A6-3 A6 5.81 7.16 78.31 71.1-84.3 -0.15 10DL
cqSB-A7-1 A7 3.52 4.21 2.91 0-7 0.11 10DL
cqSB-A7-2 A7 3.24-5.75 3.99-7.38 14.15 10.51-17.79 0.11 ~ 0.16 10DL/11DL
cqSB-A9 A9 5 6.69 64.61 50.6-68.9 -0.15 11DL
cqSB-C6-1 C6 7.43-9.61 9.42-15.06 61.43 60.47-62.39 0.20 ~ 0.27 10DL/11DL/12DL
cqSB-C6-2 C6 7.96-11.25 9.92-14.84 70.59 68.69-72.5 0.20 ~ 0.26 10DL/11DL/12DL
cqSB-C7 C7 3.22 4.1 29.11 26.4-49.6 0.11 10DL
cqST-A3-1 A3 7.35 9.13 139.41 136.9-141.3 0.1 11DL
cqST-A3-2 A3 3.25 4.89 149.31 145.7-151.3 0.08 12DL
cqST-A5-1 A5 6.08 7.52 9.11 1-18.1 -0.1 11DL
cqST-A5-2 A5 4.49 6.21 52.21 48.8-58.4 0.09 11DL
cqST-A6 A6 3.08 3.9 82.31 69.3-93.4 -0.07 11DL
cqST-A9-1 A9 7.37 10.41 38.01 29.6-44.7 -0.1 10DL
cqST-A9-2 A9 5.75 7.15 68.91 61.3-69.2 -0.1 11DL
cqST-A10 A10 3.14 4.18 46.61 34.1-60.4 -0.07 10DL
cqST-C6-1 C6 4.84 5.83 60.71 55.6-62.7 0.09 11DL
cqST-C6-2 C6 3.93 4.74 67.21 65-68.6 0.08 11DL
cqST-C6-3 C6 3.01-4.31 4.14-5.81 71.31 69.95-72.66 0.08 ~ 0.09 11DL/12DL
cqST-C9-1 C9 2.83-4.43 3.26-6.16 26.29 19.22-33.37 -0.09 ~ -0.08 10DL/11DL
cqST-C9-2 C9 4.56 7.58 34.71 28.7-44.7 -0.06 10DL
cqSPS-A1 A1 3.16 4.69 53.21 41-62.9 0.94 13WH
cqSPS-A2 A2 3.69 5.52 48.51 39.3-58 -1.51 12DL
cqSPS-A5 A5 3.46 5.47 48.81 45.4-54.6 -0.99 13WH
cqSPS-C6-1 C6 6.08 9.82 57.31 55.2-59.3 2.12 12DL
cqSPS-C6-2 C6 6.74 9.26 69.41 69.3-71.0 2.16 12DL
cqSPS-C6-3 C6 2.87-7.99 4.32-11.16 71.01 70.22-71.8 1.56 ~ 2.02 11DL/12DL/13WH
cqSV-A3 A3 3.59 4.79 136.91 125.9-140.1 0.04 12DL
cqSV-A5-1 A5 5.62-6.43 6.51-8.48 8.78 2.76-14.81 -0.05 10DL/11DL
cqSV-A5-2 A5 3.99 5.26 26.81 20.8-29.9 -0.04 10DL
cqSV-A6-1 A6 2.73 3.47 47.71 37.4-52.2 -0.04 11DL
cqSV-A6-2 A6 2.93-3.34 3.79-3.86 50.9 49.47-52.33 -0.04 10DL/12DL
cqSV-A6-3 A6 2.60-2.65 3.33-3.43 56.2 53.47-58.92 -0.03 10DL/11DL
cqSV-C1 C1 3.38 4.36 77.91 75.9-79.3 -0.04 11DL
cqSV-C6-1 C6 6.2 7.59 55.31 54.8-60.7 0.05 10DL
cqSV-C6-2 C6 5.71 8.15 65.71 61.7-68.6 0.06 12DL
cqSV-C6-3 C6 6.09-8.47 8.26-10.39 70.16 67.97-72.34 0.06-0.07 10DL/11DL/12DL
cqSV-C6-4 C6 6.2 8.25 85.11 77.1-87.1 0.05 10DL
cqSD-C4 C4 3.03 4.36 27.41 18.4-28.7 0.15 10DL
cqSD-C6-1 C6 3.12 4.47 66.21 64.2-67.8 0.15 11DL
cqSD-C6-2 C6 2.98-4.39 4.28-6.15 70.02 68.52-71.52 0.17 11DL/12DL
cqSD-C9-1 C9 2.87-4.62 5.17-6.71 19.41 18.6-25.3 0.27 10DL
cqSD-C9-2 C9 2.87 5.17 25.11 19.4-40.2 0.16 13WH
  1. aQTL name, two letters followed the ‘cq’ indicate different traits (SL; silique length, SB; silique breadth, ST; silique thickness, SPS; seed number per silique, SV; silique volume, SD; seed density); bLocation of QTLs; c LOD score of consensus QTLs; dPhenotype variation explanation of QTLs; ePeak position; fConfidence interval; g Additive effects; hEnvironments of consensus QTLs appeared