Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response

Ghosh, Ajit; Islam, Tahmina

doi:10.1186/s12870-016-0773-9

Table 2 List of identified GLYII genes in Soybean (Glycine max) along with their detailed information and localization

From: Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response

Name	Gene	Protein	Chromosome no	CDS coordinate (5’ to 3’)	CDS (bp)	Exons	PP length (aa)	MW (kDa)	pI	Localization
GmGLYII-1	Glyma.02 g220100	Glyma.02 g220100.1	2	40797403–40800820	609	5	202	22.8	5.62	Cy^b
GmGLYII-2	Glyma.04 g224100	Glyma.04 g224100.1	4	49456049–49460172	600	6	199	22.0	7.12	Cy^a,b
		Glyma.04 g224100.2			546	6	181	20.0	6.54	Cy^a; Ec^b
		Glyma.04 g224100.3			486	5	161	17.9	6.49	Cy^a,b
		Glyma.04 g224100.4			432	4	143	15.9	7.59	Cy^a, Ec^b
GmGLYII-3	Glyma.06 g140800	Glyma.06 g140800.1	6	11478165–11482810	777	7	258	28.7	6.86	Cy^b
GmGLYII-4	Glyma.11 g126200	Glyma.11 g126200.1	11	9591802–9595913	948	7	315	34.7	6.06	Nu^a; Mt^b
GmGLYII-4	Glyma.11 g126200	Glyma.11 g126200.2	11	9591802–9595913	861	7	286	31.5	5.92	Ch^a,b; Mt^a,b
GmGLYII-5	Glyma.12 g050800	Glyma.12 g050800.1	12	3651594–3655661	951	8	316	35.0	5.93	Ch^a; Mt^b
		Glyma.12 g050800.2			948	8	315	34.9	5.94	Nu^a; Mt^b
		Glyma.12 g050800.3			924	8	307	34.0	6.22	Nu^a; Mt^b
GmGLYII-6	Glyma.13 g261400	Glyma.13 g261400.1	13	36531853–36536326	1134	9	377	41.4	8.87	Ch^a; PM^b, Ec^b
GmGLYII-7	Glyma.13 g345400	Glyma.13 g345400.1	13	43601121–43604841	990	7	329	36.3	8.82	Ch^a,c; Mt^b
GmGLYII-7	Glyma.13 g345400	Glyma.13 g345400.2	13	43601121–43604841	876	8	291	32.0	7.71	Mt^a,b
GmGLYII-8	Glyma.14 g187700	Glyma.14 g187700.1	14	45250598–45254278	777	7	258	28.7	5.65	Cy^a,b
GmGLYII-8	Glyma.14 g187700	Glyma.14 g187700.2	14	45250598–45254278	546	5	181	20.0	5.84	Cy^a,b
GmGLYII-9	Glyma.15 g028900	Glyma.15 g028900.1	15	2325622–2329211	981	7	326	35.8	9.0	Ch^a,c; Mt^b
GmGLYII-9	Glyma.15 g028900	Glyma.15 g028900.2	15	2325622–2329211	948	8	315	34.7	8.88	Ch^a,c; Mt^b
GmGLYII-10	Glyma.15 g245500	Glyma.15 g245500.1	15	46785385–46788016	570	5	189	20.8	9.03	Mt^b; Ec^b
GmGLYII-11	Glyma.18 g163500	Glyma.18 g163500.1	18	37294122–37294499	258	2	85	9.5	6.34	Cy^b; Ec^b
GmGLYII-12	Glyma.20 g118000	Glyma.20 g118000.1	20	36083279–36091841	1584	12	527	58.8	6.56	Ch^a; Cy^b
		Glyma.20 g118000.2			1467	12	488	54.5	5.92	Ch^a; Cy^b
		Glyma.20 g118000.3			1467	12	488	54.5	5.92	Ch^a; Cy^b

Abbreviations: CDS coding DNA sequence, PP polypeptide length, MW molecular weight, P ^I isoelectric point, bp base pair, aa amino acid, kDa kilodalton, Ch chloroplast, Cy cytosol, Ec extracellular, Mt mitochondria, Nu nucleus
^aLocalization prediction by CELLO v.2.5 (http://cello.life.nctu.edu.tw/)
^bLocalization prediction by pSORT (http://www.genscript.com/wolf-psort.html)
^cChloroplast localization signal confirmed by ChloroP (http://www.cbs.dtu.dk/services/ChloroP/)

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ISSN: 1471-2229

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