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Table 3 Reads showing differential expression between cultivars and/or treatments

From: Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars

Libraries

EdgeR DEG (% of total clusters)

DEseq DEG (% of total clusters)

Total DEG (% of total clusters)

Up-regulated clusters (% of total clusters)

Down-regulated clusters (% of total clusters)

I59-D/I59-C

209 (0.49 %)

176 (0.41 %)

226 (0.52 %)

165 (0.38 %)

61 (0.14 %)

RUB-D/RUB-C

323 (0.75 %)

306 (0.71 %)

343 (0.80 %)

251 (0.58 %)

92 (0.21 %)

RUB-C/I59-C

173 (0.40 %)

169 (0.39 %)

184 (0.43 %)

104 (0.24 %)

80 (0.19 %)

RUB-D/I59-D

392 (0.91 %)

433 (1.00 %)

490 (1.14 %)

320 (0.74 %)

170 (0.39 %)

  1. Differentially expressed genes (DEG) were obtained with the R/Bioconductor packages DEseq and EdgeR. Total DEG values mean the union of DEseq and EdgeR results. The calculation of percentage was based on total of clusters (43,087 clusters). Cultivars (RUB Rubi and I59: IAPAR59) of C. arabica and treatments (C control and D drought) are indicated
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BMC Plant Biology

ISSN: 1471-2229

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