Table 1 Summary of SNPs in the 12 varieties
From: SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice
|  | All | Intergene | Intron | 5′-UTR | 3′-UTR | Exon |
|---|---|---|---|---|---|---|
chr1 | 2703 | 1545 | 228 | 120 | 217 | 690 |
chr2 | 2205 | 1367 | 175 | 122 | 89 | 518 |
chr3 | 2099 | 1281 | 212 | 79 | 100 | 499 |
chr4 | 2033 | 1239 | 211 | 107 | 92 | 453 |
chr5 | 1626 | 1010 | 154 | 67 | 81 | 354 |
chr6 | 1927 | 1232 | 128 | 76 | 111 | 406 |
chr7 | 1746 | 1092 | 148 | 60 | 67 | 408 |
chr8 | 1613 | 1057 | 148 | 83 | 49 | 292 |
chr9 | 1463 | 986 | 133 | 70 | 38 | 254 |
chr10 | 1471 | 994 | 131 | 35 | 72 | 287 |
chr11 | 1972 | 1213 | 148 | 63 | 119 | 490 |
chr12 | 1824 | 1303 | 117 | 42 | 65 | 327 |
All | 22682 | 14319 | 1933 | 924 | 1100 | 4978 |