Table 1 QTLs for traits and associated genes

Plant height

86

1338

Spikelet number

71

1019

Panicle number

39

460

Leaf senescence

37

669

Panicle length

37

772

Biomass yield

33

442

Seedling vigor

32

416

Leaf width

25

456

Tiller number

25

434

1000-seed weight

22

504

Root number

21

459

Root thickness

20

285

Seed dormancy

20

299

Chlorophyll content

17

271

Leaf length

17

324

Spikelet density

16

472

Root length

15

237

Seed number

15

545

Anther length

9

257

Culm thickness

9

336

Awn length

8

168

Culm length

8

253

Seed length

8

138

Grain yield

7

71

Mesocotyl length

7

67

Yield

7

264

Carbohydrate content

6

124

Carbon content

6

184

Grain length

6

113

Grain number

6

199

Panicle weight

6

296

Primary branch

6

70

Root activity

6

48

Flour color

5

78

Leaf area

5

84

Seed width

5

110

100-seed weight

4

148

Germination speed

4

35

Grain weight

4

45

Head rice

4

91

Amylose content

3

16

Consistency viscosity

3

78

Gelatinization temperature

3

43

Grain shattering

3

82

Grain width

3

21

Ratooning ability

3

150

Rubisco content

3

161

Secondary branch

3

69

Spikelet weight

3

138

Chlorophyll ratio

2

25

Flower number

2

12

Gel consistency

2

10

H2O2 content

2

18

Leaf height

2

82

Setback

2

12

Breakdown viscosity

1

5

Groat percentage

1

51

Leaf perimeter

1

5

Photosynthetic ability

1

21

Protein content

1

4

Root volume

1

27

Seed density

1

22

Seed weight

1

15