|  | Genome Assembly | RepeatExplorer (758 Mb) |  | ChIP enrichment | |||
---|---|---|---|---|---|---|---|---|
 | RefBeet 1.1 (567 Mb) | |||||||
 |  | genome proportion | size | genome proportion | size | Δ |  |  |
 |  | [%] | [Mb] | [%] | [Mb] | [Mb] | CenH3 | H3K9me2 |
Repeat | Â | Â | Â | Â | Â | Â | Â | Â |
Superfamily | ||||||||
 | family |  |  |  |  |  |  |  |
Ty3-gypsy retrotransposons |  | 7.61 | 43.15 | 4.37 | 33.09 | −10.23 | 0.8–7.81 | 0.42–3.38 |
 | Beetle2 | 0.12 | 0.68 | 0.48 | 3.67 | 2.99 | 3.00 | 2.01 |
 | Beetle4 | 0.00 | 0.00 | 0.10 | 0.74 | 0.74 | 4.54 | 2.07 |
 | Beetle7 | 0.08 | 0.45 | 0.65 | 4.92 | 4.47 | 5.34 | 1.58 |
 | Total Beetle | 0.50 | 2.84 | 1.25 | 9.50 | 6.66 | 3.0–5.34 | 0.75–2.07 |
 | Bongo3 | 2.02 | 11.45 | 1.90 | 14.42 | 2.96 | 0.28 | 0.63–1.62 |
Ty1- copia retrotransposons |  | 4.56 | 25.86 | 4.99 | 37.82 | 11.97 | 0.11–0.49 | 0.8–2.37 |
 | Cotzilla | 1.72 | 9.75 | 3.02 | 22.89 | 13.14 | 0.25–0.15 | 0.8–1.83 |
 | Salire | 0.34 | 1.93 | 0.49 | 3.71 | 1.79 | 0.16 | 1.83 |
 | Patty | 0.18 | 1.02 | 0.10 | 0.72 | −0.30 | 0.11 | 2.37 |
ENV-like retrotransposons |  | 4.05 | 22.96 | 2.14 | 16.22 | −6.74 | 0.10–0.42 | 1.01–2.55 |
 | Elbe family | 3.01 | 17.07 | 2.03 | 15.41 | −1.66 | 0.10–0.42 | 1.01–2.43 |
LINE |  | 3.77 | 21.38 | 0.14 | 1.06 | −20.31 | 0.16 | 2.65 |
Tandem Repeat |  | 3.31 | 18.77 | 11.15 | 84.52 | 65.75 | 0.08–3.22 | 0.33–3.61 |
 | pBV | 0.27 | 1.53 | 6.17 | 46.75 | 45.21 | 2.34–3.22 | 0.87–1.2 |
 | pEV | 0.17 | 0.96 | 3.58 | 27.14 | 26.17 | 0.13 | 2.6 |
 | Niobe | 0.02 | 0.11 | 0.06 | 0.46 | 0.35 | 0.14 | 1.81 |
 | BvSat04 | 0.03 | 0.17 | 0.03 | 0.19 | 0.02 | 0.08 | 3.61 |
DNA transposons |  | 2.07 | 11.74 | 3.93 | 29.79 | 18.05 | 0.11–1.02 | 0.25–3.15 |
 | Mutator | 0.00 | 0.00 | 2.01 | 15.24 | 15.24 | 0.11–1.02 | 0.26–3.15 |
 | En/Spm (CACTA superfamily) | 0.00 | 0.00 | 0.89 | 6.78 | 6.78 | 0.12–0.17 | 1.84–2.14 |
Helitron |  | 0.56 | 3.18 | 0.10 | 0.76 | −2.42 | 0.12 | 1.51 |
SINE |  | 0.49 | 2.78 | 0.05 | 0.38 | −2.40 | 0.31–0-64 | 0.37–0.46 |
rDNA |  | 0.15 | 0.85 | 1.56 | 11.82 | 10.97 | 0.17–0.42 | 0.47–1.05 |
Pararetrovirus | Â | 0.06 | 0.34 | 0.09 | 0.68 | 0.34 | 0.5 | 1.55 |
Unclassified Dispersed Repeats |  | 0.08 | 0.45 | 0.00 | 0.00 | −0.45 | - | - |
plastid DNA |  | 0.00 | 0.00 | 9.58 | 72.62 | 72.62 | 1.77–3.09 | 1.62–1.79 |
Unknown |  | 6.28 | 35.61 | 4.69 | 35.55 | −0.06 | 0.08–4.10 | 0.23–3.64 |