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Table 7 Results of alignments of markers associated with cane yield and sugar content with higher value of allelic substitution effect (ASE) in the multi-QTL model for the sugarcane GWAS panel against Sorghum bicolor sequences

From: Genome-wide association mapping of quantitative traits in a breeding population of sugarcane

Trait

Marker

DArT sequence size (pb)

BLAST algorithma

Result from alignment with S. bicolor

Identity

Expect

Sorghum chromosome

Accesion N°

CY 2010

M140

487

blastn

Sorghum bicolor clone BAC 88 M4, complete sequence

100/132 (76 %)

7.00E-18

8

AY661656.1

CY 2011

M100

318

blastn

Sorghum bicolor putative cytochrome P450-like protein

73/95 (77 %)

2.00E-10

1

AF466201.1

SC 2009

M28

470

dm blast

alpha kafirin

59/62 (95 %)

1.00E-19

unassigned

Y17556.1

SC 2010

M171

711

m blast

alpha kafirin

74/86 (86 %)

5.00E-21

unassigned

Y17556.1

SC 2011

M51

579

dm blast

Sorghum bicolor hypothetical protein, mRNA

74/94 (79 %)

2.00E-14

6

XM_002448117.1

  1. a megablast (m blast), discontiduous mega blast (dm blast) or blastn