Table 1 Significantly differentially expressed genes between each of the three CMS lines and the maintainer line Meixiang B (MB)

LOC_Os01g07560.1

Os01g0170300

receptor-like protein kinase 2 precursor

−0.2069

−0.5904

−1.048

1.845

LOC_Os01g66330.1

Os01g0886600

ATP-dependent Clp protease ATP-binding subunit clpX

−0.5614

−0.3908

−0.8934

1.8455

LOC_Os02g01980.1

Os02g0110000

GDSL-like lipase/acylhydrolase, putative, expressed

−1.3225

−1.1067

−1.517

3.9465

LOC_Os03g03370.1

Os03g0125100

fatty acid hydroxylase, putative, expressed

−0.3472

0.032

−0.9512

1.2665

LOC_Os03g07250.1

Os03g0168600

cytochrome P450, putative, expressed

−0.5027

−0.5707

−1.6895

2.7625

LOC_Os03g14010.1

Os03g0243700

glycosyl hydrolase family 10 protein, putative, expressed

−0.1561

−0.4239

−0.8669

1.447

LOC_Os04g33370.1

Os04g0407900

cytochrome P450, putative, expressed

−0.2626

−0.4836

−0.4772

1.2235

LOC_Os04g48210.1

Os04g0570600

cytochrome P450, putative, expressed

−0.9813

−0.9355

−0.6901

2.607

LOC_Os05g34700.1

Os05g0419800

GDSL-like lipase/acylhydrolase, putative, expressed

−0.2070

−0.3188

−0.6501

1.1755

LOC_Os06g05550.1

Os06g0148200

GDSL-like lipase/acylhydrolase, putative, expressed

−0.3661

−0.0609

−0.6714

1.0983

LOC_Os06g48170.1

Os06g0696500

glycosyl hydrolases family 16, putative, expressed

−0.0667

−0.3345

−0.6643

1.0657

LOC_Os06g49760.1

Os06g0711800

invertase/pectin methylesterase inhibitor family protein

0.03012

−0.5528

−0.7377

1.2605

LOC_Os08g03682.1

Os08g0131100

cytochrome P450, putative, expressed

−0.2918

−0.4609

−1.0019

1.7545

LOC_Os08g45150.1

Os08g0565900

GDSL-like lipase/acylhydrolase, putative, expressed

−1.6005

0.9628

−1.95

2.5875

LOC_Os10g33250.1

Os10g0471100

WAX2, putative, expressed

−0.1448

−0.4345

−0.6497

1.2285

LOC_Os11g03520.1

Os11g0129500

GDSL-like lipase/acylhydrolase, putative, expressed

−0.7088

−0.2609

−0.4341

1.404

LOC_Os11g32650.1

Os11g0530600

chalcone synthase, putative, expressed

−0.5194

−0.5342

−0.7627

1.8165

LOC_Os02g38130.1

Os02g0594800

no apical meristem protein, putative, expressed

0.3738

0.5906

0.2201

−1.1846

LOC_Os03g12510.1

Os03g0226200

non-symbiotic hemoglobin 2, putative, expressed

0.5177

1.17

0.1738

−1.8615

LOC_Os04g05650.1

Os04g0142400

expressed protein

0.3188

0.4501

0.5841

−1.353

LOC_Os07g11110.1

Os07g0212200

NAD dependent epimerase/dehydratase family protein

0.2827

1.0536

0.0270

−1.363

LOC_Os09g13940.1

Os09g0309700

AP2 domain containing protein, expressed

0.1881

0.8742

0.0502

−1.1123

LOC_Os10g22080.1

Os10g0365300

expressed protein

0.3461

1.1042

0.4549

−1.905

LOC_Os10g38340.1

Os10g0527400

glutathione S-transferase GSTU6, putative, expressed

−0.2856

1.7145

0.2405

−1.6695

LOC_Os11g03660.1

Os11g0131100

VQ domain containing protein, putative, expressed

0.3910

0.6612

0.3753

−1.4275

LOC_Os11g07960.1

Os11g0182200

transferase family protein, putative, expressed

0.1436

0.2447

0.7153

−1.1033

LOC_Os11g47560.1

Os11g0701500

glycosyl hydrolase, putative, expressed

0.2834

0.9313

0.0480

−1.2625