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Table 2 Mapped contig results of RNA-Seq reads from null segregant (NG) and OsFAD2-1RNAi rice lines at three grain developmental stages

From: RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain

Contigs

Null segregant

Os-FAD2-1 RNAi

Sample1

Sample 2

Sample 3

Sample 1

Sample 2

Sample 3

10 DAA

 Counted contigs

1,474,350

2,451,049

912,841

2,305,750

7,974,195

3,179,294

 Unique contigs

1,403,705

2,334,799

858,280

2,090,665

7,406,550

3,050,886

 Non-S contigs

70,645

116,250

54,561

215,085

567,645

128,408

 Un-C contigs

380,469

691,998

678,922

221,969

1,119,121

590,977

 Total contigs

1,854,819

3,143,047

1,591,763

2,527,719

9,093,316

3,770,271

 Counted contigs (%)

79.49

77.98

57.35

91.22

87.69

84.33

 Unique contigs (%)

75.68

74.28

53.92

82.71

81.45

80.92

 Non-S contigs (%)

3.81

3.70

3.43

8.51

6.24

3.41

 Un-C contigs (%)

20.51

22.02

42.65

8.78

12.31

15.67

15 DAA

 Counted contigs

1,721,045

4,038,637

6,507,485

1,260,698

4,102,787

5,184,375

 Unique contigs

1,580,034

3,759,033

5,944,747

1,211,621

3,877,771

4,889,384

 Non-S contigs

141,011

279,604

562,738

49,077

225,016

294,991

 Un-C contigs

210,716

347,568

496,403

385,614

1,123,069

436,145

 Total contigs

1,931,761

4,386,205

7,003,888

1,646,312

5,225,856

5,620,520

 Counted contigs (%)

89.09

92.08

92.91

76.58

78.51

92.24

 Unique contigs (%)

81.79

85.70

84.88

73.60

74.20

86.99

 Non-S contigs (%)

7.30

6.37

8.03

2.98

4.31

5.25

 Un-C contigs (%)

10.91

7.92

7.09

23.42

21.49

7.76

20 DAA

 Counted contigs

2,945,375

1,943,916

1,348,074

3,914,475

791,645

3,627,328

 Unique contigs

2,797,599

1,778,024

1,212,290

3,446,816

734,727

3,386,969

 Non-S contigs

147,776

165,892

135,784

467,659

56,918

240,359

 Un-C contigs

447,772

250,284

168,761

441,185

464,829

492,027

 Total contigs

3,393,097

2,194,200

1,516,835

4,355,660

1,256,474

4,119,355

 Counted contigs (%)

89.09

88.59

88.87

89.87

63.01

88.06

 Unique contigs (%)

86.80

81.03

79.92

79.13

58.48

82.22

 Non-S contigs (%)

82.45

7.56

8.95

10.74

4.53

5.83

 Un-C contigs (%)

4.36

11.41

11.13

10.13

36.99

11.94

  1. Non-S contigs- Non-specific contigs; Un C contigs-Un-counted contigs