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Table 2 Glycolytic enzymes differentially expressed in avocado in response to flooding

From: Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi

Name

Annotation

E-value

FI vs C

F vs C

FC 22 h

FC 48 h

FC 22 h

FC 48 h

Pa_Contig00049

PREDICTED: Vitis vinifera hexokinase-1-like (LOC100242358). mRNA

0

3.06

3.93

3.47

4.38

Pa_Contig00073

PREDICTED: Nelumbo nucifera pyruvate kinase, cytosolic isozyme (LOC104591283), transcript variant X4, mRNA

0

2.18

2.22

1.99

2.19

Pa_Contig00092

PREDICTED: Nelumbo nucifera pyruvate kinase, cytosolic isozyme-like (LOC104612526), mRNA

0

2.67

2.44

2.31

1.98

Pa_Contig00101

PREDICTED: Elaeis guineensis 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (LOC105046041), mRNA

0

2.35

1.65

2.05

1.77

Pa_Contig00105

PREDICTED: Nelumbo nucifera pyruvate kinase, cytosolic isozyme (LOC104610148), transcript variant X5, mRNA

0

−2.35

−3.31

−2.77

−3.21

Pa_Contig00106

PREDICTED: Nelumbo nucifera pyruvate kinase, cytosolic isozyme-like (LOC104612526), mRNA

0

4.71

4.78

3.73

4.85

Pa_Contig00124

Magnolia liliiflora GADPH mRNA for glycolytic glyceraldehyde-3-phosphate dehydrogenase

0

6.4

5.54

5.61

5.38

Pa_Contig00281

PREDICTED: Elaeis guineensis phosphoglycerate kinase, cytosolic (LOC105059872), transcript variant X2, mRNA

0

3.6

3.41

2.99

3.04

Pa_Contig00331

Persea americana mRNA for fructose-bisphosphate aldolase (alf gene)

1e-175

2.66

3.00

3.22

2.90

Pa_Contig00355

Persea americana mRNA for fructose-bisphosphate aldolase (alf gene)

0

−1.6

−2.12

−1.56

−2.17

Pa_Contig00366

PREDICTED: Phoenix dactylifera ATP-dependent 6-phosphofructokinase 3-like (LOC103714334), mRNA

0

9.36

9.81

9.27

10.47

Pa_Contig00411

PREDICTED: Vitis vinifera pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (LOC100249662), mRNA

0

21.82

13.02

19.66

13.00

Pa_Contig00493

PREDICTED: Nelumbo nucifera glucose-6-phosphate isomerase, cytosolic (LOC104595713), mRNA

0

3.45

2.51

2.87

2.32

Pa_Contig00650

Actinidia eriantha fructokinase mRNA, complete cds

0

5.40

8.92

5.79

8.86

Pa_Contig00959

PREDICTED: Nelumbo nucifera triosephosphate isomerase, cytosolic (LOC104602457), mRNA

0

−1.87

−2.75

−2.29

−2.69

Pa_Contig01066

M.liliiflora GADPH mRNA for glycolytic glyceraldehyde-3-phosphate dehydrogenase

0

3.12

2.35

2.44

1.91

Pa_Contig01152

PREDICTED: Nelumbo nucifera triosephosphate isomerase, cytosolic (LOC104602457), mRNA

0

5.38

7.28

5.20

6.76

Pa_Contig01301

PREDICTED: Nelumbo nucifera triosephosphate isomerase, chloroplastic-like (LOC104605564), transcript variant X3, misc_RNA

0

−1.62

−1.87

−1.62

−2.01

Pa_Contig01521

PREDICTED: Nelumbo nucifera NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (LOC104603324), mRNA

0

3.37

3.14

2.93

2.37

Pa_Contig01833

PREDICTED: Nelumbo nucifera probable fructokinase-1 (LOC104605215), mRNA

1e-150

−1.98

−1.86

−1.73

−2.19

Pa_Contig02126

PREDICTED: Phoenix dactylifera pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (LOC103718504), mRNA

3e-117

−1.86

−2.65

−1.74

−2.89

Pa_Contig02161

PREDICTED: Vitis vinifera pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (LOC100256839), mRNA

0

−1.39

−2.36

−1.48

−2.04

Pa_Contig02414

PREDICTED: Malus domestica hexokinase-1-like (LOC103449780), mRNA

2e-146

ns

2.16

 

−1.67

Pa_Contig02512

58 % coverage

3e-56

20.27

11.41

18.3

11.48

Pa_Contig02723

PREDICTED: Nelumbo nucifera NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like (LOC104610711), mRNA

0

2.94

2.89

2.83

2.57

Pa_Contig03335

PREDICTED: Amborella trichopoda enolase (LOC18441538), mRNA

4e-137

5.30

3.98

3.88

3.74

Pa_Contig03561

PREDICTED: Nelumbo nucifera glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like (LOC104611012), mRNA

3e-75

2.25

2.33

2.24

2.24

Pa_Contig04410

PREDICTED: Phoenix dactylifera glucose-6-phosphate isomerase, cytosolic (LOC103702710), transcript variant X1, mRNA60 % coverage

1e-67

5.11

3.50

3.83

3.54

Pa_Contig04576

Annona cherimola enolase mRNA, complete cds

6e-78

3.83

3.82

3.16

3.65

Pa_Contig05176

PREDICTED: Vitis vinifera phosphoglycerate mutase (LOC100245371), mRNA

1e-125

−1.53

−1.57

−1.62

−1.59

Pa_Contig06531

PREDICTED: Camelina sativa glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic (LOC104772375), mRNA

1e-54

3.22

2.52

2.32

2.17

Pa_Contig07171

PREDICTED: Nicotiana sylvestris glucose-6-phosphate isomerase, cytosolic (LOC104225311), transcript variant X3, mRNA

2e-14

3.80

3.31

3.16

2.68

Pa_Contig07301

PREDICTED: Phoenix dactylifera glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like (LOC103696512), mRNA 140 bp

5e-41

−2.38

−1.62

−2.62

−1.75

  1. Adj. P-value <0.05, log2fold change >1 or < -1 in at least one comparison
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BMC Plant Biology

ISSN: 1471-2229

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