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Table 1 Log2 fold change values for BA-treated samples compared to control samples. Selected genes were retested using NanoString nCounter assay with independent samples, with the same sample number and experimental design used in the RNA-seq experiment. A dash (−) indicates changes that were not significant in a given tissue in the RNA-Seq assay (FDR of 10−4). Gene names are shown without “LOC_” prefix for brevity

From: Characterization of the cytokinin-responsive transcriptome in rice

 

Roots

Shoot

Gene

Description

RNA-seq

Nano

RNA-seq

Nano

Os02g51930

cytokinin-O-glucosyltransferase 2

2.51

1.31

-

-

Os07g13800

cytokinin-N-glucosyltransferase

1.82

1.74

-

-

Os11g12300

NBS-LRR disease resistance protein

2.39

2.01

-

-

Os11g12320

disease resistance protein RPM1

2.14

1.86

-

-

Os03g55080

WRKY3

1.07

0.71

-

-

Os05g46020

WRKY7

3.829

2.73

-

-

Os05g25770

WRKY45

3.24

1.95

-

-

Os09g25070

WRKY62

4.23

2.42

-

-

Os05g09020

WRKY67

3.15

2.50

-

-

Os07g48630

ethylene-insensitive 3

1.09

1.14

-

-

Os02g03410

CAMK_like.12

2.09

2.12

-

-

Os02g53180

1-aminocyclopropane-1-carboxylate oxidase

4.01

3.12

-

-

Os03g29410

tyrosine protein kinase domain containing protein

2.14

1.80

-

-

Os03g42070

Cyclin

−1.94

nda

-

-

Os03g46440

BTBA4 - Bric-a-Brac

2.18

1.56

-

-

Os06g39590

OsIAA23

1.70

1.37

-

-

Os07g11739

cytochrome P450

4.20

1.71

-

-

Os07g40630

BRASSINOSTEROID INSENSITIVE 1 precursor

1.75

1.57

-

-

Os09g38210

auxin efflux carrier component

2.35

1.59

-

-

Os02g13900

BES1/BZR1 homolog protein

1.01

0.80

  

Os04g57720

OsRR6

4.89

3.77

3.95

1.21

Os12g43110

OsSAUR58

−1.41

−2.39

-

-

Os10g20260

CSLF7 - cellulose synthase-like family F

−4.29

−3.10

-

-

Os04g44670

AP2 domain containing protein

−2.04

−1.60

-

-

Os04g39980

gibberellin 20 oxidase 2

−1.66

−1.06

-

-

Os04g52670

OsSAUR21

1.02

0.49

0.72

0.68

Os07g48830

glycosyl transferase 8 domain containing protein

3.13

1.14

−0.85

−0.63

Os11g05470

RCN1 Centroradialis-like1 homogous to TFL1

−2.53

−2.75

2.07

0.53

Os01g09640

Myb transcription factor

1.24

0.20

−0.58

−0.56

Os08g42080

ACR5

−0.95

−0.85

3.24

1.85

Os01g55240

gibberellin 2-beta-dioxygenase

−1.04

−0.11

0.97

−0.08

Os07g06860

gibberellin receptor GID1L2

−1.61

−1.62

2.67

NDb

  1. anone detected in the cytokinin-treated sample
  2. bnone detected in the either control or cytokinin-treated sample