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Table 2 RNA editing site conditions in higher plant chloroplast genomes

From: Abundant RNA editing sites of chloroplast protein-coding genes in Ginkgo biloba and an evolutionary pattern analysis

 

Moss Hornwort Fern

Gymnosperm

Angiosperm

 

Pp

Af

Ac

Gb

Pt

Ct

Os

Zm

Ta

Pa

Cs

At

Gh

Ab

Sl

Nt

Total editing sites

2

942

349

255

26

36

21

26

26

44

32

34

54

35

36

37

C to U

2

509

314

255

26

36

21

26

26

44

32

34

54

35

36

37

U to C

0

433

35

0

0

0

0

0

0

0

0

0

0

0

0

0

1st codon edits

0

165

9

63

0

0

0

0

0

0

0

0

0

0

0

0

2nd codon edits

1

546

237

174

19

30

20

24

24

38

29

29

47

33

33

34

3rd codon edits

0

28

21

14

0

0

0

1

1

0

0

0

1

1

1

1

Silent edits

0

28

21

16

0

0

0

1

0

2

0

0

1

0

0

0

New starts

1

5

21

2

0

1

1

1

1

1

1

1

1

2

2

2

New stops

0

3

3

7

2

1

0

0

0

0

0

0

0

0

0

0

Untranslated region

1

9

ND

ND

ND

ND

1

1

ND

2

0

2

ND

0

0

0

  1. Taxa abbreviations shown above are: Pp: Physcomitrella patens, Af: Anthoceros formosae, Ac: Adiantum capillus-veneris, Gb: Ginkgo biloba, Pt: Pinus thungergii, Ct: Cycas taitungensis, Os: Oryza sativa, Zm: Zea mays, Ta: Triticum aestivum, Pa: Phalaenopsis aphrodite, Cs: Cucumis sativus, At: Arabidopsis thaliana, Gh: Gossypium hirsutum, Ab: Atropa belladonna, Sl: Solanum lycopersicum and Nt: Nicotiana tabacum; ND stand for No available data. If there are no special instructions, then these abbreviations apply to Additional file 1: Table S1 and Additional file 2: Table S2
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BMC Plant Biology

ISSN: 1471-2229

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