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Table 5 QTLs for seed mineral contents in the RILs across the two locations

From: Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.)

QTL a

Location

LG

Closest marker

Position

LOD

R2 b

CI c

Parent allele d

B-Ps1.1

Whitlow

I

TP40441

138.3

7.3

15.1%

128.9–148.4

Kiflica

 

Spillman

I

TP50388

145.3

6.7

13.7%

130.6–151.5

Kiflica

B-Ps6.1

Spillman

VI

TP44490

120.0

4.7

10.3%

113.8–131.6

Kiflica

B-Ps7.1

Whitlow

VII

TP65523

81.6

4.5

11.3%

74.6–93.5

Aragorn

 

Spillman

VII

TP40383

90.5

5.0

9.7%

78.6–95.5

Aragorn

Ca-Ps4.1

Whitlow

IV

TP47685

5.4

5.8

6.5%

0.0–13.9

Aragorn

 

Spillman

IV

TP47685

5.4

4.7

5.8%

0.0–10.0

Aragorn

Ca-Ps5.1

Whitlow

V

TP27214

53.4

9.9

12.7%

43.3–57.7

Kiflica

 

Spillman

V

TP27214

53.4

7.0

9.8%

44.3–56.1

Kiflica

Ca-Ps7.1

Whitlow

VII

TP4961

54.6

3.8

4.2%

51.2–54.6

Aragorn

 

Spillman

VII

TP4961

54.6

4.8

6.0%

46.0–67.5

Aragorn

Ca-Ps7.2

Whitlow

VII

AB122_VII

151.3

17.2

23.1%

141.4–161.0

Aragorn

 

Spillman

VII

TP5669

151.9

14.2

20.3%

141.4–161.0

Aragorn

Fe-Ps2.1

Spillman

II

TP68770

43.5

5.9

11.9%

33.3–55.1

Aragorn

Fe-Ps2.2

Whitlow

II

TP51928

89.9

6.0

12.3%

79.0–98.2

Aragorn

Fe-Ps3.1

Whitlow

III

TP75231

135.2

5.2

10.7%

124.2–145.9

Aragorn

Fe-Ps5.1

Spillman

V

TP75570

32.5

4.0

7.9%

27.3–41.5

Aragorn

Fe-Ps6.1

Whitlow

VI

TP3330

95.4

5.2

10.5%

87.6–99.7

Kiflica

 

Spillman

VI

TP36434

91.6

5.3

10.6%

86.6–101.6

Kiflica

K-Ps3.1

Whitlow

III

agpl1_SNP2_III

2.4

3.5

7.4%

1.7–8.4

Aragorn

K-Ps5.1

Spillman

V

TP8763

126.9

4.2

9.5%

122.9–130.4

Aragorn

K-Ps6.1

Whitlow

VI

TP3330

95.4

3.1

6.7%

95.4

Kiflica

K-Ps6.2

Spillman

VI

TP25320

113.2

3.3

6.9%

111.2–114.8

Kiflica

Mg-Ps3.1

Whitlow

III

TP73169

136.6

3.8

7.7%

132.2–145.9

Aragorn

Mg-Ps6.1

Whitlow

VI

TP3330

95.4

7.5

15.9%

82.7–107.9

Kiflica

Mg-Ps6.2

Spillman

VI

TP25320

112.2

5.9

13.6%

101.9–123.8

Kiflica

Mg-Ps7.1

Whitlow

VII

TP65523

79.6

4.2

11.0%

74.6–94.5

Aragorn

 

Spillman

VII

TP66383

93.5

7.4

17.7%

76.6–99.9

Aragorn

Mn-Ps5.1

Whitlow

V

TP31866

190.0

3.4

6.2%

188.7–190.0

Kiflica

 

Spillman

V

TP39246

188.7

4.2

9.1%

183.4–190.0

Kiflica

Mn-Ps6.1

Whitlow

VI

TP45228

95.7

4.6

8.5%

87.6–98.7

Kiflica

Mn-Ps7.1

Whitlow

VII

TP73423

162.9

9.6

19.8%

154.3–173.8

Aragorn

 

Spillman

VII

TP15320

167.3

4.0

8.6%

162.9–168.3

Aragorn

Mo-Ps5.1

Whitlow

V

TP42330

41.2

9.7

21.7%

31.1–52.4

Kiflica

 

Spillman

V

TP35621

39.7

11.4

24.6%

29.6–52.4

Kiflica

P-Ps3.1

Whitlow

III

TP75231

125.2

6.7

20.5%

110.0–135.2

Aragorn

P-Ps5.1

Spillman

V

TP75570

32.5

3.5

6.5%

32.5–35.1

Aragorn

P-Ps6.1

Spillman

VI

TP43599

71.5

3.3

6.4%

70.9–72.5

Aragorn

P-Ps6.2

Whitlow

VI

TP3330

95.4

3.6

7.7%

95.0–95.7

Kiflica

 

Spillman

VI

TP46134

89.6

4.9

10.5%

85.9–97.7

Kiflica

P-Ps7.1

Whitlow

VII

TP60315

45.0

3.5

7.5%

43.6–45.0

Kiflica

P-Ps7.2

Whitlow

VII

TP66383

92.5

5.6

13.1%

78.6–98.9

Aragorn

 

Spillman

VII

TP40383

90.5

10.0

21.0%

77.6–99.9

Aragorn

S-Ps3.1

Spillman

III

TP48073

152.7

3.3

6.9%

152.7

Aragorn

S-Ps6.1

Whitlow

VI

TP45228

95.7

6.3

14.1%

81.7–99.7

Kiflica

 

Spillman

VI

TP45228

95.7

4.4

9.0%

87.6–104.9

Kiflica

S-Ps7.1

Spillman

VII

TP40383

90.5

3.5

7.3%

87.7–91.5

Aragorn

Zn-Ps2.1

Whitlow

II

TP51928

88.9

3.9

8.1%

84.6–91.5

Aragorn

Zn-Ps3.1

Spillman

III

TP30941

102.4

4.2

8.9%

92.4–104.8

Kiflica

Zn-Ps3.2

Whitlow

III

TP5158

138.9

6.2

13.7%

121.2–145.9

Aragorn

Zn-Ps5.1

Spillman

V

TP60024

38.0

3.4

7.1%

37.5–38.0

Aragorn

  1. aQTL names represent the traits, the initial of Pisum sativum, linkage group # and order of the QTLs
  2. bR2 is percentage of phenotypic variance explained by the QTLs
  3. cCI represents 95% confidence interval for the QTL location
  4. dParental allele contributing to the trait