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Table 3 Trimers and long OGs down-regulate gene sets associated with organelle organization, photosynthesis and metabolic processes

From: Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

Gene set

Identity

Size

NES

P-value

RNA_METABOLIC_PROCESS

GO:0016070

13

-2.78

0

CHLOROPLAST_PART

GO:0044434

17

-2.69

0

PIGMENT_BIOSYNTHETIC_PROCESS

GO:0046148

6

-2.66

0

NCRNA_METABOLIC_PROCESS

GO:0034660

6

-2.66

0

PYRUVATE_METABOLIC_PROCESS

GO:0006090

11

-2.66

0

ISOPRENOID_METABOLIC_PROCESS

GO:0006720

11

-2.66

0

ISOPENTENYL_DIPHOSPHATE_BIOSYNTHETIC_PROCESS

GO:0009240

11

-2.65

0

CELLULAR_CARBOHYDRATE_METABOLIC_PROCESS

GO:0044262

22

-2.65

0

ISOPENTENYL_DIPHOSPHATE_BIOSYNTHETIC_PROCESS, MEVALONATE-INDEPENDENT_PATHWAY

GO:0019288

11

-2.64

0

PIGMENT_METABOLIC_PROCESS

GO:0042440

6

-2.64

0

PLASTID_PART

GO:0044435

17

-2.64

0

CELLULAR_GLUCAN_METABOLIC_PROCESS

GO:0006073

6

-2.64

0

PLASTID

GO:0009536

28

-2.63

0

ISOPENTENYL_DIPHOSPHATE_METABOLIC_PROCESS

GO:0046490

11

-2.61

0

CELLULAR_POLYSACCHARIDE_METABOLIC_PROCESS

GO:0044264

6

-2.60

0

GLUCAN_BIOSYNTHETIC_PROCESS

GO:0009250

6

-2.59

0

POLYSACCHARIDE_METABOLIC_PROCESS

GO:0005976

6

-2.59

0

GLYCERALDEHYDE-3-PHOSPHATE_METABOLIC_PROCESS

GO:0019682

11

-2.58

0

CHLOROPLAST

GO:0009507

27

-2.58

0

  1. The 20 most significantly down-regulated gene sets based on the GO database are presented, as determined by a GSEA on the GenePattern platform using the combined trimer and long OG gene expression data