Table 1 Subgenome position, conserved amino acid residues (NPA motif, Ar/R filter, Froger's position), the prediction of transmembrane and MIP domains and subcellular localization of B. rapa Aquaporins
Gene name | Sub genome | NPA motif | Ar/R selectivity filter | Froger’s Position (P1 - P5) | TMH + MIP | Subcellular localization | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LB | LE | H2 | H5 | LE1 | LE2 | P1 | P2 | P3 | P4 | P5 | ||||
BrSIP1;1a | LF | NPT | NPA | I | T | P | I | I | A | A | Y | W | 6 + 1 | CM |
BrSIP1;1b | MF1 | NPT | NPA | I | T | P | I | I | A | A | Y | W | 6 + 1 | CM |
BrSIP1;2 | LF | NPC | NPA | V | T | P | I | I | A | A | Y | W | 6 + 1 | CM |
BrSIP2;1a | MF1 | NPL | NPA | S | K | G | A | F | V | A | Y | W | 6 + 1 | CM |
BrSIP2;1b | MF2 | NPL | NPA | S | K | G | A | F | V | A | Y | W | 6 + 1 | CM |
BrSIP2;1c | LF | NPV | NPA | S | K | G | A | F | V | A | Y | W | 6 + 1 | CM |
BrNIP1;2a | LF | NPA | NPG | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP1;2b | MF1 | NPA | NPG | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP2;1a | LF | NPA | NPA | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP2;1b | LF | NPA | NPA | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP3;1a | MF1 | NPA | NPA | W | I | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP3;1b | MF2 | NPA | NPA | W | I | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP4;1 | MF2 | NPA | NPA | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP4;2a | LF | NPA | NPA | W | V | A | R | F | S | A | Y | I | 6 + 1 | CM |
BrNIP4;2b | MF2 | NPA | NPA | - | V | A | R | F | S | A | Y | I | 4 + 1 | CM |
BrNIP4;2c | MF2 | NPA | NPA | - | - | A | R | F | S | A | Y | I | 3 + 1 | CM |
BrNIP5;1a | MF2 | NPS | NPV | A | I | G | R | F | T | A | Y | L | 6 + 1 | CM |
BrNIP5;1b | MF1 | NPS | NPV | A | I | A | R | F | T | A | Y | L | 6 + 1 | CM |
BrNIP6;1a | MF1 | NPA | NPV | A | I | A | R | F | T | A | Y | L | 6 + 1 | CM |
BrNIP6;1b | LF | NPA | NPV | A | I | A | R | F | T | A | Y | L | 6 + 1 | CM |
BrNIP7;1 | LF | NPS | NPA | A | V | G | R | Y | S | A | Y | M | 6 + 1 | CM |
BrTIP1;1 | MF1 | NPA | NPA | H | I | A | V | T | A | A | Y | W | 6 + 1 | V |
BrTIP1;2a | LF | NPA | NPA | H | I | A | V | T | A | A | Y | W | 6 + 1 | V |
BrTIP1;2b | MF1 | NPA | NPA | H | I | A | V | T | A | A | Y | W | 6 + 1 | V |
BrTIP1;3 | LF | NPA | NPA | H | I | A | V | T | S | A | Y | W | 6 + 1 | V |
BrTIP2;1a | LF | NPA | NPA | H | I | G | R | T | S | A | Y | W | 6 + 1 | V |
BrTIP2;1b | MF2 | NPA | NPA | H | I | G | R | T | S | A | Y | W | 6 + 1 | V |
BrTIP2;1c | MF1 | NPA | NPA | H | I | G | R | T | S | A | Y | W | 5 + 1 | V |
BrTIP2;2 | LF | NPA | NPA | H | I | G | R | T | S | A | Y | W | 6 + 1 | V |
BrTIP2;3a | LF | NPA | NPA | H | I | G | R | T | S | A | Y | W | 6 + 1 | V |
BrTIP2;3b | MF1 | NPA | NPA | H | I | G | R | T | S | A | Y | W | 5 + 1 | V |
BrTIP3;1a | MF1 | NPA | NPA | H | I | A | R | T | A | A | Y | W | 6 + 1 | V |
BrTIP3;1b | LF | NPA | NPA | H | I | A | R | T | A | A | Y | W | 6 + 1 | V |
BrTIP3;2a | LF | NPA | NPA | H | M | A | R | T | A | S | Y | W | 6 + 1 | V |
BrTIP3;2b | MF1 | NPA | NPA | H | M | A | R | T | A | S | Y | W | 6 + 1 | V |
BrTIP4;1 | MF1 | NPA | NPA | H | I | A | R | T | S | A | Y | W | 6 + 1 | V |
BrTIP5;1 | LF | NPA | NPA | N | V | G | C | V | A | A | Y | W | 6 + 1 | V and CM |
BrPIP1;1a | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;1b | MF1 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;2a | MF1 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;2b | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;3a | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;3b | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;4 | MF1 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP1;5 | MF1 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;1 | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;2a | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;2b | LF | NPA | - | F | - | - | - | Q | - | - | F | W | 5 + 1 | CM |
BrPIP2;3a | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;3b | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 5 + 1 | CM |
BrPIP2;4a | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;4b | MF1 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;4c | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;5a | LF | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;5b | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;6 | MF2 | NPA | NPA | F | H | T | R | Q | S | A | F | W | 6 + 1 | CM |
BrPIP2;7a | MF2 | NPA | NPA | F | H | T | R | M | S | A | F | W | 6 + 1 | CM |
BrPIP2;7b | LF | NPA | NPA | F | H | T | R | M | S | A | F | W | 6 + 1 | CM |
BrPIP2;7c | MF1 | NPA | NPA | F | H | T | R | M | S | A | F | W | 6 + 1 | CM |