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Fig. 11 | BMC Plant Biology

Fig. 11

From: Identification and analysis of the stigma and embryo sac-preferential/specific genes in rice pistils

Fig. 11

The novel protein-coding genes. a-e, Screen captures from IGV software showed regions of the putative novel genes outside the previously annotated genes. Every screen capture was divided into 5 tracks. From top to bottom, these tracks were as follows: positions at the chromosome, read alignments in the second sample of HY ovary, read alignments in the second sample of HY stigma, the gene model annotations from the Rice Annotation Project Database (RAP-DB), the gene model annotations from the Rice Genome Annotation Project. The positions of the five regions were as follows: a, chr07: 2279460–2282852; b, chr08: 10498364–10504912; c, chr03: 17873014–17878106; d, chr08: 7455980–7458153; e, chr02: 3561191–3563938. In the second and third track, each track was divided into two smaller tracks: the gray graphs of the upper track indicated the number of reads that map at the positions indicated in the coordinates track; the gray boxes were the reads, and thin lines indicated reads mapping across introns. In the fourth and fifth tracks, the black boxes were the previously annotated genes. f, Confirmation of the putative novel genes using semi-quantitative RT-PCR. NIP, Nipponbare; HY, Hwayoung

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