Table 2 Top-25 upregulated genes in pollen of LA1777 vs. LA0407
From: Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers
Gene | p value | Mean expression | Fold change | Annotation |
|---|---|---|---|---|
Sopen12g014190.1 | 9.3E-05 | 26.2 | 2922.0 | [HP] Putative GPI-anchored AGP |
Sopen01g010170.1 | 4.1E-04 | 3.7 | 1138.1 | Hypothetical protein |
Sopen12g018710.1 | 1.1E-05 | 2.7 | 598.0 | KH Domain RNA-Binding Protein |
Sopen06g022970.1 | 7.5E-05 | 2.7 | 591.3 | Isoflavone-7-O-Methyltransferase 9; flavonol biosynthesis |
Sopen05g003280.1 | 3.0E-04 | 5.2 | 397.0 | F-box Protein CPR1/30; negative regulator of defense response |
Sopen09g012310.1 | 7.7E-04 | 1.9 | 318.1 | Ribonuclease H-like superfamily protein; possible non-LTR retrotransposon family (LINE) |
Sopen10g022570.1 | 2.7E-05 | 1.9 | 287.3 | Hypothetical protein |
Sopen08g010210.1 | 7.1E-04 | 1.8 | 277.0 | [HP] Possible retroelement |
Sopen01g033860.1 | 2.2E-04 | 1.5 | 198.4 | RabA4 subfamily of Rab GTPases; promotes tip growth of pollen tubes |
Sopen01g032940.1 | 3.6E-04 | 1.5 | 189.8 | Aspartyl Protease family protein, CDR1-like |
Sopen12g018720.1 | 2.0E-04 | 1.4 | 168.0 | Hypothetical protein |
Sopen12g022970.1 | 6.9E-04 | 1.3 | 154.6 | F-box/RNI superfamily; plant-specific FBD domain |
Sopen08g010180.1 | 6.2E-04 | 1.2 | 130.0 | Hypothetical protein |
Sopen03g005740.1 | 1.5E-04 | 1.1 | 105.8 | Acyl Activating Enzyme, benzoate-CoA ligase |
Sopen03g020850.1 | 5.5E-04 | 1.1 | 98.6 | Possible transcription factor; VND-interacting 1, NAC domain |
Sopen12g027860.1 | 5.6E-04 | 1.0 | 86.2 | [HP] possible non-coding RNA |
Sopen05g018880.1 | 1.6E-04 | 1.5 | 84.7 | Hypothetical protein |
Sopen10g022630.1 | 7.8E-04 | 0.9 | 74.6 | [HP] Non-coding RNA |
Sopen10g023190.1 | 2.1E-04 | 0.9 | 71.5 | [HP] Possible LTR retrotransposon |
Sopen06g021510.1 | 5.4E-05 | 0.9 | 71.4 | Zeatin O-Glucosyltransferase-like |
Sopen12g006170.1 | 4.6E-06 | 9.5 | 70.0 | Basic Leucine Zipper 34-like, transcription factor |
Sopen03g007850.1 | 1.7E-04 | 0.8 | 57.8 | Tetratricopeptide Repeat (TPR)-like superfamily protein; pre-mRNA splicing factor SYF1 |
Sopen10g028190.1 | 3.2E-04 | 1.1 | 52.6 | Wall-associated Receptor Kinase (WAK2-like), Ca2+ binding, cell wall expansion |
Sopen02g013470.1 | 6.6E-04 | 1.1 | 50.4 | Cysteine-rich RLK |
Sopen10g022640.1 | 5.4E-04 | 0.8 | 48.8 | [HP] Non-LTR retrotransposon family (LINE) |