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Table 4 Upregulated genes in styles of LA1777 vs. LA0407 that show concordant expression patterns

From: Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers

Gene

p value

Mean expression

Fold change

Annotation

Interspecific UI (upregulated in LA2119)

 Sopen01g011020.1

4.0E-21

75.9

108.4

Hypothetical protein

 Sopen12g021490.1

7.0E-18

10.2

17.4

NAD(P)-linked Oxidoreductase

 Sopen07g030750.1

1.0E-13

4.7

6.1

Cytochrome P450 (CYP72A15)

 Sopen06g026260.1

5.5E-17

39.4

4.7

Oxidoreductase, involved in lipid metabolic process

 Sopen05g028380.1

2.0E-08

7.9

3.6

Heavy metal transport/detoxification superfamily protein

 Sopen10g033870.1

1.4E-10

12.7

3.3

RING/U-box superfamily protein

 Sopen12g006800.1

3.2E-13

73.7

3.1

Photosystem II, Light-harvesting Chlorophyll B-binding protein

 Sopen06g019380.1

1.6E-14

108.4

3.1

Photosystem I Reaction Center Subunit II

 Sopen03g005470.1

1.2E-13

6.9

3.0

Peroxisomal Membrane 22 kDa (Mpv17/PMP22) family protein

Interpopulation UI (downregulated in LA2119)

 Sopen10g001450.1

8.8E-18

3.2

13.4

Unknown chloroplast stroma protein

 Sopen01g031170.1

5.3E-06

9.9

11.0

Transcription factor GRAS, DELLA-like protein

 Sopen05g006860.1

7.4E-14

74.6

6.5

Alpha-1,4-Glucan-Protein Synthase, involved in cell wall biogenesis

 Sopen11g005210.1

6.8E-19

33.1

5.3

Alpha/beta-Hydrolases superfamily protein, Serine Hydrolase

 Sopen11g028080.1

7.3E-16

5.2

4.2

DHBP, RibB-like; 3,4-Dihydroxyl-2-Butanone 4-Phosphate Synthase

 Sopen08g025270.1

7.9E-12

54.7

4.1

ABC-transporter-like, P-Glycoprotein 2 (PGP2)

 Sopen03g006340.1

5.2E-13

19.1

3.6

Unknown function (DUF827)

 Sopen07g027150.1

3.4E-10

131.8

3.5

Phosphoenolpyruvate Carboxylase (PEPC)

 Sopen12g001030.1

1.1E-08

9.2

3.4

RING/U-box superfamily protein

 Sopen04g034310.1

1.4E-09

2.8

3.4

HXXXD-type Acyl-transferase family protein

 Sopen11g001350.1

2.6E-11

11.0

3.1

Plastid-lipid Associated Protein PAP / fibrillin family protein

 Sopen08g021970.1

2.8E-13

17.8

3.1

Hemoglobin Protein 3 (GLB3)

 Sopen12g006260.1

5.1E-13

3.9

3.1

F-box/LRR Protein, MAX2

  1. A linear discriminant function was trained on the expression values of LA1777 and LA0407, and then used to classify other accessions as UI or non-UI