Skip to main content

Table 2 Cross-database references in CottonFGD

From: CottonFGD: an integrated functional genomics database for cotton

Database Name

Description

Available Genome Assemblies

Cotton specific databases

CottonGen [10]

A genomics, genetics and breeding database for cotton research

G. raimondii (JGI & BGI)

 

G. arboreum (BGI)

 

G. hirsutum (NAU & BGI)

GraP [11]

Platform of Functional Genomics Analysis in Gossypium raimondii

G. raimondii (JGI)

ccNet [12]

Database of co-expression networks for diploid and polyploid Gossypium

G. arboreum (BGI)

 

G. hirsutum (NAU)

General plant databases

Phytozome [41]

A comparative platform for green plant genomics

G. raimondii (JGI)

GreeNC [42]

A Wiki-database of plant lncRNAs

G. raimondii (JGI)

PGDD [43]

Plant Genome Duplication Database

G. raimondii (JGI)

PIECE [44]

Plant gene structure comparison and evolution database

G. raimondii (JGI)

Planteome [45]

Plant Ontology database

G. raimondii (JGI)

PlantTFDB [46]

Plant Transcription Factor Database

G. raimondii (JGI)

 

G. arboreum (BGI)

 

G. hirsutum (NAU)

PLAZA [47]

An access point for plant comparative genomics

G. raimondii (JGI)