Fig. 3
From: Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation
Differential gene methylation and differential gene transcription in embryo calli are not highly correlated. a–f Venn diagrams display numbers of differentially methylated and transcriptionally regulated genes. The cut-off criteria are <0.05 for methylation (calculated using MEDIPS) and FDR < 0.001 for transcriptional regulation. a–c Genes with different promoter methylation in the embryo callus compared to the CK group. d–f Genes that display differential gene body methylation during embryo callus formation