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Table 3 Tags identifying antisense sequences

From: Deep Super-SAGE transcriptomic analysis of cold acclimation in lentil (Lens culinaris Medik.)

TAG number

TAG sequence

Fold change1

Nucleotide sequence identity between TAG and lentil sequences2

Lens sequences

Other legume species sequences

UniProt identification and accession number

AS8

CATGAGATTGCACTTGAGTAACTTGG

ANTISENSE

7.34

25-26

64544 647

331115122

502080648

2 g104400

Mediator of RNA polymerase II transcription subunit 15a??

Transcription cofactor, putative, G7IM96_MEDTR??

AS27

CATGAGTTGGCGTCCAATATTTTGAA

ANTISENSE

5.67

25-26

72001 296

56138 122

331117328

086s0008

502127601

ABC transporter C family member??

NAS10a

CATGTTTTTGAATTGTGATTGCTCTC

ANTISENSE

7.28

25

N107087

N6881

331108837

368545933

388509589

502117510

571480914

Haloacid dehalogenase-like hydrolase, A0A072VYK9_MEDTR

NAT38

CATGATTTTCCCTCTCAAGACTAAGT

ANTISENSE

5.10

25-26

N11063

68382 215

66867 237

552990588

502124263

571537824

Protein FAM135B-like protein, A0A0B2PEB3_GLYSO

NAT39

CATGGTCATAAAGGTTCTGAATAGGG

ANTISENSE

See AS2 and AT7

5.10

25-26

331108296

268537762

268541446

5g097280

502099852

359806052

Light-harvesting complex I chlorophyll A/B-binding protein, G7KEN2_MEDTR

Chlorophyll a/b binding protein 215, CB215_PEA

N15 = T30

CATGATGTCGCCGACCGTAACAATAA

ANTISENSE

5.08

25-26

331109463

87696 239

64868 288

1g012710

1g012690

502124985

Protease inhibitor/seed storage/LTP family protein, G7I725_MEDTR

A18 = T25

CATGGTTATAGCCTCCTCCTCCACCA

ANTISENSE

See A1, A22 and A35

5.39

26

331121144

65367 194

5g084570

114415397

502097761

Cold and drought-regulated protein CORA, G7K7D2_MEDTR

Putative glycine-rich protein, Q0E7L3_PEA

A25 = T26

CATGATGATATAATCAGTTACCATTG

ANTISENSE

5.01

23-26

65697 176

331109145

2605888

Dormancy-associated protein, O22612_PEA (glycine-rich protein).

A35

CATGGCCAATAGGCCAAGGATGAGGA

ANTISENSE

See A1, A18 and A22

4.04

26

C1949

331121144

331108748

5g084570

114415397

Putative glycine-rich protein, Q0E7L3_PEA

Cold and drought-regulated protein CORA, CORA_MEDSA

G7K7D2_MEDTR

  1. 1 The 0 normalized values were changed to 0.5 to calculate fold change
  2. 2 Two numbers indicate the existence of polymorphism among lentil sequences in the nucleotide sequence corresponding to the TAG