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Table 2 The TEs around the WOX gene locus

From: Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

Type

Number of elments

Length occupied

Percentage of sequence (%)

Number of elments

Length occupied

Percentage of sequence (%)

 

10,000 bp region

2000 bp region

DNA transposons

5

1264 bp

0.16

0

0 bp

0.00

CMC-EnSpm

5

1264 bp

0.16

0

0 bp

0.00

MULE-MuDR

0

0 bp

0.00

0

0 bp

0.00

PIF-Harbinger

0

0 bp

0.00

0

0 bp

0.00

TcMar-Pogo

0

0 bp

0.00

0

0 bp

0.00

hAT

0

0 bp

0.00

0

0 bp

0.00

hAT-Ac

0

0 bp

0.00

0

0 bp

0.00

hAT-Charlie

0

0 bp

0.00

0

0 bp

0.00

hAT-Tag1

0

0 bp

0.00

0

0 bp

0.00

hAT-Tip100

0

0 bp

0.00

0

0 bp

0.00

Retroelements

31

15,657 bp

1.92

2

1400 bp

0.69

LINE:

5

1501 bp

0.18

1

373 bp

0.18

L1

5

1501 bp

0.18

1

373 bp

0.18

LTR:

26

14,156 bp

1.74

1

1027 bp

0.51

Caulimovirus

1

126 bp

0.02

0

0 bp

0

Copia

13

8097 bp

0.99

1

1027 bp

0.51

Gypsy

12

5933 bp

0.73

0

0 bp

0.00

RC:

0

0 bp

0.00

0

0 bp

0.00

Helitron

0

0 bp

0.00

0

0 bp

0.00

Low_complexity

6

257

0.03

0

0 bp

0.00

Simple_repeat

559

23,669

2.91

173

6793

3.35

Unspecified

68

24,602

3.02

7

1825

0.90