Spatial regulation of monolignol biosynthesis and laccase genes control developmental and stress-related lignin in flax

Le Roy, Julien; Blervacq, Anne-Sophie; Créach, Anne; Huss, Brigitte; Hawkins, Simon; Neutelings, Godfrey

doi:10.1186/s12870-017-1072-9

Table 1 Characteristics of the flax phenylpropanoid genes identified in this work

From: Spatial regulation of monolignol biosynthesis and laccase genes control developmental and stress-related lignin in flax

Gene name	Gene model	Genome	Microarray EST	GenBank EST	Ref
LusPAL1	Lus10040416	scaffold86	c247	JG065006	5
LusPAL2	Lus10023531	scaffold1216	c247	EH791565	4
LusPAL3	Lus10026518	scaffold617	c904	JG216766	5
LusPAL4	Lus10013805	scaffold618	c904	JG216766	5
LusC4H1	Lus10034449	scaffold310	c1220	JG081734	5
LusC4H2	Lus10019110	scaffold30	c32549	JG085936	1;5
LusC4H3	Lus10021671	scaffold208	c6570	GW864597	2
LusC4H4	Lus10035011	scaffold43	c4373	JG075414	1;5
LusC4H5	Lus10027598	scaffold2	c11079
Lus4CL1	Lus10026143	scaffold319	c3640	CA483243
Lus4CL2	Lus10008677	scaffold1635	c3640	CA483243
Lus4CL3	Lus10024123	scaffold353	c680	JG220816	5
Lus4CL4	Lus10005390	scaffold547	c680	JG218659	5
Lus4CL5	Lus10002791	scaffold125	c15833	JG239276	5
Lus4CL6	Lus10016135	scaffold344	c3980	EH791222	4
Lus4CL7	Lus10021431	scaffold612	c3980	GW866203	2
Lus4CL8	Lus10025842	scaffold605
Lus4CL9	Lus10038259	scaffold28
LusHCT1	Lus10002321	scaffold120		JG213400	5
LusHCT2	Lus10026097	scaffold319	c3481	JG235206	5
LusHCT3	Lus10010786	scaffold18	c6233	JG202486	5
LusHCT4	Lus10026123	scaffold319	c8096	CV478884	2
LusHCT5	Lus10022163	scaffold342	c6233	JG202486	5
LusC3’H1	Lus10033524	scaffold701	c581	JG230193	5
LusC3’H2	Lus10020847	scaffold711	c5820	JG226878	5
LusC3’H3	Lus10020850	scaffold711	c5820	CA483318
LusCCoAOMT1	Lus10027888	scaffold1143	c395	JG228418	5
LusCCoAOMT2	Lus10002837	scaffold810	c395	JG228418	5
LusCCoAOMT3	Lus10019841	scaffold1491	c2503	JG094269	5
LusCCoAOMT4	Lus10014074	scaffold1247	c2503	JG231505	3;5
LusCCoAOMT5	Lus10034584	scaffold9
LusCCR1	Lus10041651	scaffold272	c5445	JG227337	5
LusCCR2	Lus10024068	scaffold353	c2262	GW866594	2
LusCCR3	Lus10008774	scaffold729		JG203738	5
LusCCR4	Lus10022239	scaffold225	c11788	GW865040	2
LusCCR5	Lus10024138	scaffold353	c13273	JG149727	5
LusCCR6	Lus10042399	scaffold123	c20639	JG103050	5
LusCCR7	Lus10026273	scaffold898	c20639	JG103050	5
LusCCR8	Lus10006885	scaffold329		JG097906	5
LusCCR9	Lus10003780	scaffold806		JG088940	5
LusCCR10	Lus10012930	scaffold434	c6761	JG215733	5
LusCCR11	Lus10030973	scaffold261		JG240727	5
LusCCR12	Lus10035369	scaffold151		JG240727	5
LusF5H1	Lus10028361	scaffold413	c772	JG214534	5
LusF5H2	Lus10041811	scaffold272	c772	JG214534	5
LusF5H3	Lus10014273	scaffold275	c2179	GW865908	2
LusF5H4	Lus10025975	scaffold319	c2179	GW867449	2
LusF5H5	Lus10034300	scaffold310	c56836
LusF5H6	Lus10012582	scaffold6	c56836
LusF5H7	Lus10022303	scaffold225	c56836
LusF5H8	Lus10041511	scaffold272	c56836
LusCOMT1	Lus10015576	scaffold233	c2253	JG229091	5
LusCOMT2	Lus10032929	scaffold51	c629	JG229091	5
LusCOMT3	Lus10009442	scaffold981	c4476	GW865137	2
LusCAD1	Lus10027864	scaffold1143	c2456	JG020400	5
LusCAD2	Lus10002812	scaffold810	c2456	JG020400	5
LusCAD3	Lus10019811	scaffold1491	c3049	GW865020	2
LusCAD4	Lus10014104	scaffold1247	c3049	JG215109	5;6
LusCAD5	Lus10014363	scaffold275	c4852	JG019640	5
LusCAD6	Lus10010149	scaffold587	c6705	GW867690	2
LusCAD7	Lus10026070	scaffold319	c4852	JG102096	5
LusCAD8	Lus10023268	scaffold98		JG062652	5
LusCAD9	Lus10035956	scaffold76		EH792205	4
LusCAD10	Lus10002089	scaffold575	c4394	JG255907	5
LusCAD11	Lus10025706	scaffold605		GW866334	2
LusCAD12	Lus10002302	scaffold120	c5057	JG282203	5
LusCAD13	Lus10002300	scaffold120	c6631	JG216469	5
LusCAD14	Lus10009955	scaffold200	c3693	JG140771	5
LusCAD15	Lus10039595	scaffold15	c3758	JG217534	5

1: PR Babu, KV Rao and VD Reddy [86]); 2: A day, M Addi, W Kim, H David, F Bert, P Mesnage, C Rolando, B Chabbert, G Neutelings and S Hawkins [87]); 3: A day, G Neutelings, F Nolin, S Grec, a Habrant, D Cronier, B Maher, C Rolando, H David, B Chabbert, et al. [30]); 4: MJ roach and MK Deyholos [23]); 5: P Venglat, D Xiang, S Qiu, SL stone, C Tibiche, D cram, M Alting-Mees, J Nowak, S Cloutier, M Deyholos, et al. [88]); 6: M Wrobel-Kwiatkowska, M Starzycki, J Zebrowski, J Oszmianski and J Szopa [60])

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ISSN: 1471-2229

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