Category | Module no. | Number of genes within the module | Percentage of genes sharing conserved interactions with Arabidopsis | Module annotation | Selected genes from the modulea | Enriched GO term | pValue |
---|---|---|---|---|---|---|---|
Cell Organization | 49 | 71 | 80.28% | chromatin organization | his2a1/his2b1/his2b2/pcna2 | nucleosome organization | 2.15E-132 |
60 | 59 | 44.07% | cell division | cyc1/hmg9/GRMZM2G061287(CYCB2;4) | cell division | 1.32E-07 | |
64 | 58 | 63.79% | DNA replication | rfa1/rrb3/GRMZM2G139894(MCM2) | DNA replication | 3.16E-39 | |
69 | 53 | 30.19% | cytoskeleton | krp2/krp4/krp8/cyc3/cyc8 | microtubule motor activity | 1.64E-46 | |
Development | 6 | 182 | 35.71% | seed maturation | ole1/ole3/vp1 | monolayer-surrounded lipid storage body | 1.75E-10 |
16 | 139 | 12.95% | inflorescences development | ra1/ba1/ra3/spi1/tb1/bd1/yab10 | abaxial cell fate specification | 5.25E-10 | |
46 | 73 | 2.74% | kernels development | o2/pbf1/az19D2/az19D1/de30/zp1/zp22.1 | nutrient reservoir activity | 6.32E-64 | |
48 | 72 | 1.39% | ligules development | lg1/sbp28/ns1/myb43/sbp3 | DNA binding | 9.53E-06 | |
210 | 15 | 60.00% | ligules development | knox3/kn1/rs1/hb123/lg3/lg4/hb76/ hb8/hb48/gn1/knox5 | sequence-specific DNA binding | 8.77E-17 | |
Nutrients | 36 | 88 | 23.86% | response to phosphate starvations | ppck2/ppck3/ppck4/pht7 | cellular response to phosphate starvation | 9.62E-17 |
72 | 51 | 43.14% | nitrate assimilation | nii2/nnr1/gln3/gln6 | nitrate assimilation | 1.18E-09 | |
Primary Metabolism | 14 | 151 | 18.54% | respiratory electron transport chain | GRMZM2G450825(COX1)/ GRMZM2G173833(COX2) | mitochondrion | 9.10E-92 |
20 | 130 | 69.23% | photosynthesis | cyb6/GRMZM2G448174(PETA)/ GRMZM2G433927(PSBE) | photosynthesis | 5.46E-30 | |
86 | 40 | 42.50% | mitochondrial electron transport / ATP synthesis | nad1/nad4/GRMZM2G156068(ATP5) | mitochondrial membrane | 9.35E-28 | |
129 | 26 | 65.38% | photosynthesis | gpa1/lhcb2/lhcb3/lhcb7 | photosynthesis | 1.69E-38 | |
Secondary Metabolism | 40 | 84 | 27.38% | wax biosynthesis | gl1/gl2/gl3/fdl1 | wax biosynthetic process | 2.25E-13 |
65 | 57 | 29.82% | flavonoids biosynthesis | pr1/c2/whp1/chi1 | flavonoid metabolic process | 1.89E-12 | |
73 | 49 | 42.86% | fatty acid biosynthesis | wri1/wri2/acc1/acc2 | monocarboxylic acid metabolic process | 2.64E-27 | |
80 | 43 | 6.98% | benzoxazinoids and oxylipins biosynthesis | bx1/bx2/bx3/bx4/bx5/lox2/lox3/lox5/lox10 | oxylipin metabolic process | 6.12E-12 | |
154 | 20 | 30.00% | flavonoids biosynthesis | bz2/a1/bz1/a2/r1 | flavonoid biosynthetic process | 2.26E-08 | |
Stress | 5 | 188 | 15.96% | response to fungus | nactf7/chn1/chn2/sip1 | defense response to fungus, incompatible interaction | 3.27E-09 |
10 | 157 | 47.13% | response to heat stress | hsp18c/hsp18f/hsp1/hsftf8/hsftf12 | response to heat | 8.75E-49 | |
95 | 35 | 65.71% | response to endoplasmic reticulum stress | bip1/bip2/der1/bzip60 | response to endoplasmic reticulum stress | 6.89E-15 |