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Table 2 Comparisons of the expression levels of representative nitrate transporter genes and non-symbiotic hemoglobin genes involved in nitrate assimilation and NO scavenging. ‘ND’ represents not detected

From: Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

Gene ID

Z WL vs Control

P WL vs Control

Functional annotation

Log2FC

FDR

Log2FC

FDR

Csa1G008530

−1.54

1.46E-08

−1.36

2.78E-04

nitrate transporter 2.11

Csa2G374640

−2.81

2.39E-06

−1.78

1.58E-03

nitrate transporter 1.2-like

Csa4G007610

−1.71

1.30E-07

−1.51

1.93E-05

nitrate transporter 6.1

Csa3G027720

2.61

1.95E-04

2.48

5.24E-18

nitrate transporter 1.1-like

Csa3G134770

−2.15

2.29E-04

1.39

1.29E-03

nitrate transporter 5.2-like

Csa5G161290

7.05

1.10E-06

7.42

3.41E-15

nitrate transporter 6.3-like

Csa1G324370

ND

ND

−1.08

8.85E-04

nitrate transporter 6.2-like

Csa2G172510

ND

ND

−1.07

1.85E-05

nitrate transporter 5.2

Csa2G416080

ND

ND

−1.52

1.55E-04

nitrate transporter 6.4

Csa3G112250

ND

ND

−2.11

4.16E-05

nitrate transporter 4.3

Csa5G647280

ND

ND

−1.43

8.19E-05

nitrate transporter 4.4

Csa3G904070

ND

ND

1.04

1.59 E-03

nitrate transporter 7.3-like

Csa3G134760

2.45

6.97E-04

ND

ND

nitrate transporter 5.3

Csa6G037500

1.23

1.53E-05

ND

ND

nitrate transporter 3.1

Csa6G404120

1.16

7.62 E-03

ND

ND

nitrate transporter 4.6-like

Csa5G219390

1.24

2.96E-05

ND

ND

nitrate transporter 5.1

Csa6G187970

1.31

3.13E-06

ND

ND

nitrate transporter Y 8.1

Csa2G238880

3.38

2.43E-20

2.45

2.27E-07

non-symbiotic hemoglobin 1

Csa2G375770

3.29

1.81E-06

2.83

1.51E-27

non-symbiotic hemoglobin 3