Table 3 Genomic regions significantly associated with seedling responses to the four races of Puccinia graminis f. sp. tritici in the Ethiopian bread wheat accessions
QTL-tagging SNP index | SNP | Associated SNPs index | Chr. | Position (cM) | MAF | P value | R 2 (%) | FDR P values |
|---|---|---|---|---|---|---|---|---|
TRTTF | ||||||||
  IWB39306 | A/G | – | 1B | 60.6 | 0.1 | 1.30E-04 | 5.08 | * |
  IWB12320 | T/C | – | 2A | 106.3 | 0.15 | 3.40E-05 | 5.98 | * |
  IWB19479 | T/G | IWB1595 | 3B | 136.3 | 0.07 | 7.20E-05 | 5.47 | * |
  IWA5416 | T/C | IWB11315, IWB22036, IWB60233, IWB67415 | 6A | 5.6 | 0.08 | 2.00E-05 | 6.35 | * |
  IWB2378 | T/C | IWB4726, IWB4725, IWB7743, IWB65791 | 7B | 92.5 | 0.19 | 2.00E-05 | 6.35 | * |
TTKSK | ||||||||
  IWB26389 | A/G | IWB42742, IWB1518, IWB24614, IWB32327 | 2B | 99.9 | 0.31 | 2.40E-10 | 8.02 | **** |
  IWB64169 | A/G | IWB63221 | 7B | 171.1 | 0.13 | 3.00E-04 | 2.41 | ** |
TTTTF | ||||||||
  IWB34733 | A/G | IWB63979, IWB61381, IWB59018 | 4A | 144.4 | 0.08 | 8.90E-10 | 14.62 | **** |
TKTTF | ||||||||
  IWB14375 | T/G | IWB59006, IWB72471, IWB59005 | 6B | 113.7 | 0.096 | 3.60E-07 | 0.09 | ** |