Fig. 2
From: Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)
Manhattan plot of the -log10 p-values estimated for binary (tolerant vs susceptible) coded phenotypic response to PPV-M infection in the panel of 85 accessions using standard Mixed Linear Model algorithm adjusted for kinship (MLM + K model). Red circle indicates significant SNPs passing the Bonferroni-adjusted threshold (red horizontal line) based on the effective number of independent tests (−log10 2e-06). Quantile-quantile (QQ)-plot (top right panel) and minor allele frequencies (MAF) vs -log10 p-values (bottom right panel) are also shown