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Table 1 SNPs associated with PPV-M tolerance in a panel of 85 accessions. Chromosome positions, minor allele frequencies (MAF), p values of Hardy-Weinberg equilibrium (HWE) and respective p values under different GWA models

From: Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)

Array ID#

Chr

Pos

MAF

HWE

MLM + K

CMLM + K

SUPER

FarmCPU

p - value

SNP_ IGA_185608

2

5,772,285

0.15

0.10

5.23e-07

1.65e-05

1.91e-07

–

SNP_ IGA_185721

2

5,778,677

0.17

0.06

6.79e-06

1.68e-05

1.80e-05

–

SNP_ IGA_214703

2

8,639,144

0.09

0.12

3.32e-07

6.86e-07

3.29-e09

3.11e-12

SNP_ IGA_215563

2

8,748,723

0.17

1.00

7.46e-07

–

–

–

SNP_ IGA_217815

2

8,955,153

0.09

0.16

1.73e-05

–

–

–

SNP_ IGA_217794

2

8,950,628

0.07

0.16

4.89e-05

–

–

–

SNP_ IGA_218596

2

9,031,544

0.09

0.12

3.32e-07

7.77e-05

–

–

SNP_ IGA_258078

2

16,998,043

0.08

0.14

–

–

–

6.27e-09

SNP_ IGA_366639

3

26,378,711

0.21

0.94

1.49e-07

9.09e-06

1.09e-06

4.82e-07