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Table 2 Allelic effect estimation by standard and penalized (LASSO) logistic regression using associated SNPs loci. Odds ratio, p-values, confidence intervals and the genetic model for standard logistic regression are reported

From: Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)

SNP

Alleles

Logistic Regression

LASSO

OR

p value

L95 - U95

Model

beta

p value

SNP _IGA_185608

A:C

20.66

0.00012

4.41–96.67

DOM

0.382

0.276

SNP_ IGA_185721

C:A

11.47

0.00011

3.32–39.61

–

–

–

SNP_ IGA_214703

G:A

23.53

8.67e-05

4.86–113.9

DOM

0.145

0.117

SNP_ IGA_215563

A:C

16.56

0.00023

3.71–73.78

DOM

–

–

SNP_ IGA_217794

G:T

9.30

0.00137

2.37–36.46

DOM

–

–

SNP_ IGA_217815

A:C

9.30

0.00137

2.37–36.46

DOM

–

–

SNP_ IGA_218596

C:T

11.10

0.00121

2.58–47.72

DOM

–

–

SNP_ IGA_258078

G:A

5.47

0.00028

2.18–13.74

ADD

–

–

SNP_ IGA_366639

A :C

43.07

1.77e-05

7.72–240.2

–

0.334

2.0e-06

  1. Alleles associated with PPV-tolerance are in bold and underlined