Transposable elements generate population-specific insertional patterns and allelic variation in genes of wild emmer wheat (Triticum turgidum ssp. dicoccoides)

Table 1 Transposable element families analyzed in this study

Class^a	Order^b	Superfamily^c	Family	Size (bp)
I	LTR	Gypsy	Fatima	9997
I	LTR	Gypsy	Latidu	13,068
I	LTR	Unknown	Veju	2530
I	Non-LTR	SINE	Au	181
II	TIR	Mutator	Apollo	866
II	TIR	CACTA	Balduin	11,744
II	TIR	Tc1/Mariner	Eos	354
II	TIR	Tc1/Mariner	Fortuna	353
II	TIR	Tc1/Mariner	Tantalos	257
II	TIR	Tc1/Mariner	Minos	236
II	TIR	Tc1/Mariner	Aison	219
II	TIR	Tc1/Mariner	Oleus	150

^aI = class I- RNA elements, II = class II- DNA elements
^bLTR- long terminal repeat retrotransposon, TIR- terminal inverted repeat
^cBased on: TREP (http://botserv2.uzh.ch/kelldata/trep-db/index.html) and giri-repbase (http://www.girinst.org/repbase/update/browse.php). All the Tc1/Mariners are Inverted–Repeat Transposable Elements (MITEs)

ISSN: 1471-2229