Table 3 Detailed analysis of genes harboring polymorphic insertions of MITEs
Genea | Gene productb | TE familyc | TE insertion locationd | Insertions in populatione | Gel imagef | ||||
|---|---|---|---|---|---|---|---|---|---|
H | A | T | J | M | |||||
TRIUR3_24471 | a sterol-dependent membrane protein, At3g47200-like | Aison | 400 bp upstream, genome B | 2 | 0 | 0 | 0 | 0 | Fig. 6a |
TRIUR3_29094 | integral membrane component | Aison | Intron 4, genome A | 0 | 1 | 2 | 0 | 0 | Fig. S8a |
Traes_2BS_2453C5E6B | Response to oxidative stress; peroxidase activity | Aison | Intron 3, genome B | 2 | 1 | 2 | 2 | 2 | Fig. S8b |
Traes_7BL_2E24532BD | RNA binding, ribosomal protein | Aison | Intron, genome B | 2 | 1 | 1 | 1 | 2 | Fig. S8c |
FJ640556.1 | AIP2.2 - ABI3 (abscisic acid-insensitive 3)-interacting protein | Au | Intron 3, genome B | 2 | 1 | 1 | 1 | 2 | Fig. S8d |
Traes_1BL_DD7D021A7 | Ubiquitin-protein ligase | Au | Intron 5, genome B | 1 | 1 | 0 | 0 | 0 | Fig. S8e |
TRIUR3_22200 | ER membrane protein, transferring acyl groups other than amino-acyl groups, metabolic process | Eos | Intron 4, genome A | 2 | 1 | 2 | 1 | 1 | Fig. S8f |
Thalos | Intron 1, genome A | 2 | 2 | 1 | 1 | 2 | Fig. 6d | ||
Traes_4BS_AAE1439D4 | Nuclear-localised, ATP binding, transcription regulation | Eos | Exon (UTR), genome A | 2 | 1 | 0 | 1 | 2 | Fig. 6c |
GU817319.1- locus tag - 2383A24.5 | Predicted, homolog of Os01g0121600, integral membrane component | Hades | 960Â bp upstream, genome B | 0 | 1 | 0 | 0 | 0 | Fig. S8Â g |
Traes_3AS_94E185821 | Calcium ion binding protein | Minos | 2Â bp downstream, genome A | 2 | 1 | 1 | 2 | 2 | Fig. S8Â h |
Traes_3AS_2755E639C | Uncharacterized protein | Minos | 22Â bp upstream, both genomes | 1 | 1 | 1 | 0 | 0 | Fig. S8i |
Traes_7AL_0D3EF0026 | Uncharacterized protein | Minos | Exon 2 (UTR), genome A | 0 | 1 | 1 | 0 | 0 | Fig. 6b |
Traes_3B_5DEF2D3F1 | Basic helix-loop-helix transcription factor | Tantalos | Intron 3, genome B | 0 | 1 | 1 | 0 | 0 | Fig. S8j |