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Table 1 Classification of Class II-Ash proteins

From: Phylogenetic relationship and domain organisation of SET domain proteins of Archaeplastida

Class

 

Type

Domain Architecture

Species

Extra Domains

At

Os

Pa

Sm

Pp

Mp

Nm

Kf

Mr

Mpu

Ot

Ol

Cv

Cr

Vc

Cp

II

II-1

1A

AWS-SET

+

+

+

+

–

+

+

–

+

–

+

+

–

–

–

+

TUDOR, PLN03081,

1B

AWS-SET-PostSET

–

–

–

–

–

–

–

+

–

–

–

–

+

–

–

–

 

II-2

2A

PHD-PHD-PHD-AWS-SET

–

–

–

–

+

+

+

–

–

–

–

–

–

–

–

–

 

2B

PHD-AWS-SET

+

–

–

–

–

–

–

–

–

–

–

–

–

–

–

–

 

II-3

3A

ZnF_C2H2-AWS-SET-PostSET

+

+

-

+

+

+

–

+

–

–

–

–

–

–

–

–

ATP11, PHA03420, CITED, FAM196, SRI.

3B

ZnF_C2H2-AWS-SET

–

–

–

–

+

+

–

–

–

–

–

–

–

–

–

–

PHA, SOX, Drf_ FM1, Me425_SD1

3C

ZnF_C2H2-AWS-SET- ZnF_C2H2 ZnF_C2H2

–

–

–

–

–

–

–

–

+

–

–

–

–

–

–

–

 

II-Orphan

SET

+

–

–

–

+

+

–

+

–

+

+

–

+

+

+

+

LIM

  1. Ash proteins were classified into 4 classes, Class II-1 to Class II-3 and Class II-Orphan which were further divided into subclasses. The detailed domain arrangement with additional domains are shown. (At- Arabidopsis thaliana; Os-Oryza sativa; Pa-Picea abies; Sm-Selaginella meollendorffii; Pp-Physcomitrella patens; Mp-Marchantia polymorpha; Nm-Nitella mirabilis; Kf-Klebsormidium flaccidium; Mr.-Micromonas RCC299; Mpu-Micromonas pusila; Ot-Ostreococcus tauri; Ol-Ostreococcus lumiferans; Cv-Chlorella vulgaris; Cr-Chlamydomonas reinhardtii; Vc-Volvox carteri; Cp-Cyanophora paradoxa. Plus sign (+) and minus sign (−) indicate presence and absence of an above mentioned domain architecture