Table 2 SNPs associated with resistance to Ch3 isolate, revealed by GLM analysis and arranged according p-values
From: Identification of 50 K Illumina-chip SNPs associated with resistance to spot blotch in barley
# | Marker | Chr | Physical map position (bp) | Genetical map position (cM) | p-value | Alleles | MAF, % |
|---|---|---|---|---|---|---|---|
1 | JHI-Hv50k-2016-157070 | 3H | 17,888,495 | na | 6.04E-08* | C/G | C(0.19) |
2 | JHI-Hv50k-2016-156842 | 3H | 17,559,189 | na | 1.20E-06* | A/G | A(0.18) |
3 | JHI-Hv50k-2016-156999 | 3H | 17,817,242 | na | 5.71E-11* | A/C | A(0.25) |
4 | JHI-Hv50k-2016-156329 | 3H | 16,375,436 | na | 3.26E-09* | G/A | G(0.25) |
5 | JHI-Hv50k-2016-157182 | 3H | 17,954,351 | na | 3.67E-09* | T/A | T(0.25) |
6 | JHI-Hv50k-2016-156387 | 3H | 16,420,851 | na | 1.45E-08* | C/A | C(0.10) |
7 | JHI-Hv50k-2016-156336 | 3H | 16,375,848 | na | 1.05E-07* | A/T | A(0.11) |
8 | BOPA1_3355–605 | 2H | na | na | 1.19E-07* | C/A | C(0.19) |
9 | SCRI_RS_153880 | 2H | na | 59.3 | 1.19E-07* | T/C | T(0.19) |
10 | SCRI_RS_206529 | 2H | na | 60.5 | 1.19E-07* | A/G | A(0.19) |
11 | BOPA2_12_11504 | 2H | 520,773,185 | 57.0 | 1.19E-07* | A/G | A(0.19) |
12 | BOPA2_12_30108 | 2H | 556,024,085 | 59.3 | 1.19E-07* | A/C | A(0.19) |
13 | JHI-Hv50k-2016–98667 | 2H | 559,662,446 | na | 1.19E-07* | A/G | A(0.19) |
14 | SCRI_RS_141789 | 2H | 551,217,066 | 59.3 | 1.19E-07* | A/C | A(0.19) |
15 | JHI-Hv50k-2016-156833 | 3H | 17,558,292 | na | 1.73E-07* | T/A | T(0.29) |
16 | SCRI_RS_83731 | 2H | na | 57.0 | 1.84E-07* | T/G | T(0.21) |
17 | SCRI_RS_162917 | 2H | 517,229,083 | 57.2 | 1.84E-07* | A/G | A(0.21) |
18 | SCRI_RS_233449 | 2H | 520,779,376 | 57.0 | 1.84E-07* | G/A | G(0.21) |
19 | JHI-Hv50k-2016-155569 | 3H | 15,256,329 | na | 4.30E-07* | A/G | A(0.14) |
20 | JHI-Hv50k-2016-158003 | 3H | 18,788,405 | na | 5.36E-07* | G/A | G(0.27) |
21 | SCRI_RS_97417 | 3H | 15,255,540 | 12.1 | 1.35E-06* | C/T | C(0.34) |
22 | SCRI_RS_186769 | 2H | na | 57.4 | 1.35E-06* | G/C | G(0.22) |
23 | BOPA1_2634–2228 | 2H | 520,264,176 | na | 1.35E-06* | C/A | C(0.22) |
24 | BOPA1_5160–268 | 2H | 520,778,105 | na | 1.35E-06* | G/A | G(0.22) |
25 | SCRI_RS_132839 | 2H | 524,447,113 | 57.0 | 1.35E-06* | A/G | A(0.22) |
26 | SCRI_RS_136740 | 2H | 524,817,496 | 57.2 | 1.35E-06* | A/C | A(0.22) |
27 | SCRI_RS_191136 | 2H | 520,437,064 | 57.0 | 1.35E-06* | T/C | T(0.22) |
28 | BOPA2_12_30179 | 2H | na | 56.4 | 2.15E-06 | A/G | A(0.19) |
29 | JHI-Hv50k-2016–92202 | 2H | 309,655,073 | na | 2.96E-06 | T/C | T(0.21) |
30 | BOPA2_12_10035 | 2H | 463,231,068 | 56.7 | 3.10E-06 | G/A | G(0.19) |
31 | SCRI_RS_161169 | 2H | 483,288,774 | 56.7 | 3.10E-06 | G/A | G(0.19) |
32 | BOPA1_5254–1845 | 2H | 175,163,708 | na | 5.42E-06 | G/A | G(0.18) |
33 | SCRI_RS_109192 | 2H | 175,053,470 | na | 5.42E-06 | G/T | G(0.18) |
34 | JHI-Hv50k-2016-226122 | 4H | 645,489 | na | 6.20E-06 | A/G | A(0.37) |
35 | JHI-Hv50k-2016-155951 | 3H | 15,469,647 | na | 8.49E-06 | T/A | T(0.30) |
36 | JHI-Hv50k-2016-153016 | 3H | 7,847,727 | na | 9.22E-06 | A/G | G(0.10) |
37 | JHI-Hv50k-2016-445854 | 7H | 10,393,349 | na | 9.28E-06 | A/G | G(0.48) |
38 | JHI-Hv50k-2016-17526 | 1H | 32,102,667 | na | 9.88E-06 | G/A | A(0.42) |
39 | SCRI_RS_162708 | 7H | 56,674,116 | 47.9 | 9.88E-06 | A/G | G(0.29) |
40 | JHI-Hv50k-2016-159556 | 3H | 24,223,023 | na | 1.60E-04 | G/A | G(0.41) |
41 | BOPA2_12_31179 | 1H | 449,874,128 | 58.4 | 3.54E-04 | C/G | C(0.13) |