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Table 2 Fit of the nucleotide models using the baseml module of PAML for the complete plastid genome sequences

From: Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics

Model

Parameter count

lnL

AICc

Lineage rate (relative to background rate of 1)

Global Clock

54

−231,403.731

462,915.530

NA

Local Clock

 XI

55

−231,356.314

462,822.678

XI = 1.78149

 XI, V

56

−231,330.487

462,773.025

XI = 1.73697

V = 0.53942

 XI, V, (II + III + IX + XII)

57

−231,266.637

462,647.327

XI = 1.96045

V = 0.64983

II + III + IX + XII = 1.62495

 XI, V, (II + III + IX + XII), VII, (I + X)

59

−231,258.371

462,634.799

XI =2.05983

V = 0.74772

II + III + IX + XII = 1.82538 VII =1.41126

I + X = 1.18578

Clockless

98

−229,978.490

460,153.136

NA

  1. NOTE.—NA, not applicable in the listed analyses