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Table 3 Selected genes of transcription factors with changed expressions under non-filtered air (NF) or elevated O3 (E-O3)

From: Transcriptomic analysis of Pak Choi under acute ozone exposure revealed regulatory mechanism against ozone stress

 

FPKM

 

Group

Gene ID

Gene Annotation

E-O3

NF

bHLH

Bra000291

DNA binding/ transcription factor

3.40

19.54

Bra011237

basic helix-loop-helix (bHLH) family protein

109.50

17.89

Trihelix

Bra005127

Trihelix transcription factor GT-3b

59.24

7.74

Bra005688

Trihelix transcription factor GT-3a

85.79

5.53

Bra028899

transcription factor

12.79

0

WRKY

Bra004370

WRKY57 transcription factor

18.79

4.263

Bra036138

WRKY48 transcription factor

71.07

3.24

Bra040926

WRKY28 transcription factor

86.83

3.15

MYB

Bra014929

Myb-related protein Myb4

17.72

2.186

AP2-ERF

Bra012938

Ethylene-responsive transcription factor ERF104

318.51

30.81

Bra015660

Ethylene-responsive transcription factor ERF013

25.10

7.60

Bra019777

DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding/ sequence-specific DNA binding/ transcription factor

37.12

2.12

Bra024953

ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding/ transcription activator/ transcription factor

203.15

28.95

Bra026963

DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding/ sequence-specific DNA binding/ transcription factor

66.03

6.78

Bra028290

CBF4 (C- REPEAT-BINDING FACTOR 4); DNA binding/ transcription activator/ transcription factor

74.88

1.76

Bra035732

AP2 domain-containing transcription factor, putative

85.43

5.95

Bra040158

ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding/ transcription factor

157.31

22.51

C2H2

Bra019477

zinc finger (C2H2 type) family protein

24.60

4.61

Bra001752

AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding/ nucleic acid binding/ transcription factor/ transcription repressor/ zinc ion binding

152.39

18.96

Bra020284

RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding/ transcription factor/ zinc ion binding

22.37

4.41

Orphans

Bra015885

ARR15 (RESPONSE REGULATOR 15); negative regulator in the cytokinin-mediated signal transduction in Arabidopsis

3.05

14.43

Tify

Bra021923

JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)

0

8.41

 

Bra025713

JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding

77.83

24.39

TAZ

Bra017839

BT5 (BTB AND TAZ DOMAIN PROTEIN 5); protein binding/ transcription regulator

24.37

4.69

LOB

Bra011942

LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)

41.51

4.21

SNF2

Bra023689

CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding/ DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides/ nucleic acid binding/ nucleosome binding

10.49

0.62

PHD

Bra027316

PHD finger family protein

6.96

0

  1. FPKM the expected number of Fragments per Kilobase of transcript sequence per Millions base pairs sequenced