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Table 2 One hundred and seventeen significant association signals (P < 3.06 × 10− 4) involving 76 associated SNP loci and six phenotypic traits

From: Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

Trait

SNP Name

Chr.

Position

Alleles

Environment

P value

R 2

PH

wsnp_Ra_c16846_25598885

3A

54.99

A/G

09TA

1.00 × 10−4

7.90

 

wsnp_Ex_c13802_21639096

3A

56.74

T/C

09YZ

1.02 × 10− 4

5.09

 

wsnp_BF292596A_Ta_1_1

3A

119.09

T/C

10YZ

9.68 × 10−5

5.76

 

wsnp_JD_c8158_9193784

3B

69.01

T/C

09TA

2.39 × 10−4

8.38

 

wsnp_CAP8_c4989_2410261

3B

97.05

T/C

10YL

4.40 × 10− 5

5.00

 

wsnp_CAP8_c1419_836050

3B

97.26

A/G

10TA

4.47 × 10−5

6.05

 

wsnp_Ex_c33463_41948471

3B

97.72

A/G

10YL

4.45 × 10−5

7.41

 

wsnp_Ex_c12048_19288999

5B

71.11

T/C

09TA

1.91 × 10−4

10.00

     

09YZ

6.13 × 10−5

11.44

     

09YL

8.95 × 10−5

9.89

     

10YZ

3.27 × 10−5

3.33

     

BLUP

6.31 × 10−6

10.79

 

wsnp_Ku_c99567_87349060

5B

163.25

T/C

09YL

1.17 × 10−4

10.79

     

09YZ

2.80 × 10−4

9.42

     

10YZ

1.33 × 10−4

11.57

 

wsnp_Ex_c34597_42879693

6A

180.19

T/C

09YL

2.97 × 10−4

10.39

     

09YZ

2.91 × 10−4

10.82

 

wsnp_Ra_rep_c69821_67403173

6B

82.68

T/C

10TA

1.81 × 10−4

3.48

 

wsnp_Ex_c15458_23737002

7B

65.56

A/G

09TA

9.53 × 10− 5

11.17

     

10TA

8.40 × 10−5

10.89

SL

wsnp_JD_c6974_8084752

3B

95.50

A/G

09TA

2.17 × 10−4

3.90

 

wsnp_CAP8_c4989_2410261

3B

97.05

T/C

10TA

4.85 × 10− 5

3.02

 

wsnp_CAP8_c1419_836050

3B

97.26

A/G

10YL

4.85 × 10−5

7.02

     

BLUP

4.90 × 10−5

6.01

 

wsnp_Ex_c33463_41948471

3B

97.72

A/G

09YZ

4.85 × 10−5

3.02

 

wsnp_Ex_c1563_2987002

4A

136.22

A/G

10YL

6.13 × 10− 5

8.13

     

BLUP

1.35 × 10−5

9.05

 

wsnp_Ex_c28092_37240192

4A

140.47

A/G

10TA

2.03 × 10− 4

2.78

 

wsnp_Ex_rep_c67779_66463916

4A

141.36

A/C

09YL

3.00 × 10−4

10.60

     

09YZ

2.99 × 10−4

11.61

     

10YL

1.37 × 10− 4

9.72

     

BLUP

1.73 × 10−4

9.90

 

wsnp_Ex_c2266_4247520

4A

141.80

A/G

10YL

2.99 × 10−4

10.61

     

BLUP

3.00 × 10−4

8.60

 

wsnp_Ex_c12_21212

4A

143.00

T/G

09YZ

3.00 × 10− 4

2.60

 

wsnp_Ex_c3463_6348659

4A

144.11

A/G

10TA

2.99 × 10−4

7.61

     

10YZ

3.00 × 10− 4

8.46

     

10YL

2.29 × 10−4

9.02

 

wsnp_Ex_c27298_36506245

5A

102.41

A/G

BLUP

1.54 × 10−4

3.89

 

wsnp_Ex_c49211_53875575

5A

108.64

T/G

09TA

1.01 × 10−5

7.28

     

09YZ

2.67 × 10− 4

8.24

     

09YL

3.70 × 10−5

4.89

     

10TA

3.79 × 10−5

6.89

     

10YZ

1.11 × 10−5

5.08

     

10YL

2.66 × 10−4

5.04

 

wsnp_Ex_c10127_16635328

5A

108.92

T/C

09TA

2.54 × 10−5

2.34

 

wsnp_Ex_c19647_28632894

5A

123.92

A/G

10YZ

2.80 × 10−4

2.64

 

wsnp_Ex_c1630_3105100

5B

161.77

A/G

10YL

1.28 × 10−4

4.06

 

wsnp_Ex_c2459_4591695

5B

212.53

A/G

10YL

2.75 × 10−5

2.13

     

BLUP

6.45 × 10−5

2.25

 

wsnp_Ex_c8510_14306239

6A

175.39

A/G

10YL

1.10 × 10−4

2.70

     

BLUP

2.29 × 10−4

2.97

 

wsnp_Ex_c46061_51675853

7B

25.00

A/G

10YZ

2.86 × 10−4

10.54

 

wsnp_Ex_rep_c101269_86664147

7B

132.23

A/G

09YL

2.94 × 10−4

8.39

     

10YZ

5.89 × 10−5

10.25

SNPS

wsnp_BM140362B_Ta_1_1

1B

76.37

A/G

10TA

1.90 × 10−4

2.80

 

wsnp_Ku_rep_c68484_67499824

3A

99.60

T/C

09YZ

2.46 × 10−4

8.19

 

wsnp_Ex_rep_c67136_65617520

4B

108.15

T/C

09YZ

1.75 × 10−4

5.15

 

wsnp_Ku_c21275_31007309

5A

85.17

A/C

09YL

2.83 × 10−4

4.49

 

wsnp_RFL_Contig3939_4369467

5A

94.73

T/C

09YL

2.38 × 10− 4

4.84

 

wsnp_Ex_c7713_13153321

6B

127.53

A/C

09TA

1.41 × 10− 4

11.88

KNPS

wsnp_JD_c6974_8084752

3B

95.50

A/G

10TA

3.03 × 10−4

2.77

 

wsnp_Ex_c6129_10723019

3B

97.26

T/C

09YZ

9.11 × 10−5

8.86

     

10YZ

1.06 × 10− 4

7.79

 

wsnp_Ku_c29102_39008953

3B

123.29

A/C

09TA

1.88 × 10−5

7.12

     

09YL

7.46 × 10−5

12.61

     

BLUP

9.61 × 10−7

11.49

 

wsnp_Ku_c31407_41142340

3B

125.61

A/G

10YL

1.27 × 10− 4

8.77

 

wsnp_Ex_c11837_18996495

3B

126.24

T/G

09YL

2.28 × 10−4

10.55

     

BLUP

1.56 × 10− 4

8.69

 

wsnp_Ex_c12781_20280445

3B

126.61

A/G

10YZ

1.43 × 10−4

9.05

     

10YL

1.40 × 10−4

8.90

 

wsnp_Ex_c13154_20784674

3B

127.87

T/C

09TA

8.85 × 10−5

7.86

     

09YL

2.19 × 10− 4

11.25

     

BLUP

9.62 × 10−6

11.53

 

wsnp_Ex_c13154_20785032

3B

127.87

A/G

09TA

1.51 × 10−4

7.41

     

BLUP

2.65 × 10−5

10.59

 

wsnp_Ex_c13953_21831752

4A

13.89

T/C

09YZ

3.95 × 10−7

5.64

     

10TA

9.75 × 10−6

6.42

 

wsnp_Ex_c16551_25060833

5A

190.95

T/C

09TA

2.85 × 10−4

6.09

 

wsnp_Ex_c1630_3105100

5B

161.77

A/G

10TA

1.04 × 10−4

2.03

 

wsnp_Ex_c1302_2489542

5B

184.33

T/G

10YZ

2.35 × 10−4

2.72

 

wsnp_Ku_c56917_60245833

5B

185.06

T/C

10YZ

1.31 × 10− 4

2.84

 

wsnp_Ku_c19037_28455905

7B

57.38

A/G

09YZ

3.02 × 10−4

5.98

KWPS

wsnp_Ex_rep_c106111_90308719

1A

12.73

T/G

09YL

1.37 × 10−4

10.81

     

BLUP

1.11 × 10− 4

10.78

 

wsnp_Ex_c1130_2166731

1D

54.49

A/G

BLUP

8.41 × 10−5

2.78

 

wsnp_Ex_rep_c69919_68881108

3A

117.88

A/G

10TA

3.02 × 10−4

2.74

 

wsnp_Ex_rep_c104327_89077792

3A

118.07

A/G

09YZ

3.02 × 10−4

2.74

 

wsnp_Ra_c19079_28210937

3A

123.35

A/C

09YL

2.91 × 10−4

2.97

 

wsnp_Ex_c12341_19693570

3A

127.51

T/C

09TA

2.53 × 10−4

12.44

     

10TA

1.00 × 10−5

10.36

     

10YZ

1.21 × 10−4

11.94

 

wsnp_Ku_c29102_39008953

3B

123.29

A/C

09YZ

1.93 × 10−4

3.15

 

wsnp_Ex_c13154_20785032

3B

127.87

A/G

09TA

1.85 × 10−4

3.66

 

wsnp_Ex_rep_c67136_65617520

4B

108.15

T/C

09YZ

2.98 × 10−4

10.43

 

wsnp_JD_rep_c49046_33288885

5A

116.00

T/C

09YZ

1.52 × 10−4

10.51

     

BLUP

2.97 × 10−5

11.94

 

wsnp_Ku_c14275_22535693

5A

116.57

A/G

10TA

2.53 × 10−4

2.32

 

wsnp_Ku_c14275_22535576

5A

116.83

T/C

10YZ

1.94 × 10−4

2.84

 

wsnp_Ex_c43578_49857984

5A

130.98

T/C

09YL

2.91 × 10−4

12.48

     

BLUP

1.24 × 10−4

12.76

 

wsnp_Ex_rep_c101757_87064771

5A

133.01

T/C

09YZ

2.24 × 10−4

8.30

 

wsnp_Ex_rep_c101757_87065169

5A

133.17

T/C

09TA

2.28 × 10−4

7.18

 

wsnp_Ex_c57667_59284398

5B

125.89

T/C

09TA

8.37 × 10−5

5.19

 

wsnp_Ex_c1050_2009301

6A

45.73

T/G

10TA

3.03 × 10−4

4.27

 

wsnp_Ex_c19467_28423197

6B

50.70

A/G

09TA

1.56 × 10−4

4.80

 

wsnp_Ex_c65899_64135487

7D

1.12

A/G

09YL

8.35 × 10−5

3.10

TKW

wsnp_Ex_c3685_6723631

2A

9.91

A/G

BLUP

1.65 × 10−4

4.76

 

wsnp_BE406351A_Ta_2_2

2A

112.62

T/C

09TA

3.00 × 10−4

8.08

 

wsnp_RFL_Contig2914_2757372

2B

211.84

A/G

10YL

1.35 × 10−4

8.27

 

wsnp_Ku_rep_c69511_68887456

3A

59.73

T/C

09TA

1.68 × 10−4

11.41

     

09YL

4.73 × 10−5

11.61

     

09YZ

2.96 × 10−4

10.47

     

BLUP

7.72 × 10−5

10.04

 

wsnp_CAP12_c4769_2174195

4B

106.45

T/C

10TA

2.62 × 10−4

2.14

 

wsnp_BF291478B_Ta_2_1

6B

80.00

T/C

09TA

1.61 × 10−4

4.65