Table 1 GO categories enrichment analysis (Fisher exact test) of differentially expressed genes (DEGs) identified within cultivar against PPV infection using Blast2GO. Cultivar, Category (MF: Molecular Function, BP: Biological Process, CC: Cellular Component), GO-ID, Term, FDR (False Discovery Rate) and p-value are indicated
Cultivar | GO Category | GO ID | GO Name | FDR | P-Value | N. Genes |
|---|---|---|---|---|---|---|
Canino | BIOLOGICAL PROCESS | GO:0009414 | response to water deprivation | 0,0002 | 3,39E-007 | 26 |
GO:0009637 | response to blue light | 0,0051 | 2,16E-005 | 11 | ||
CELLULAR COMPONENT | GO:0031977 | thylakoid lumen | 0,0012 | 3,39E-006 | 11 | |
GO:0009570 | chloroplast stroma | 0,0179 | 9,26E-005 | 36 | ||
GO:0048555 | generative cell nucleus | 0,0402 | 2,97E-004 | 3 | ||
GO:0000786 | Nucleosome | 0,0404 | 3,05E-004 | 7 | ||
GO:0009534 | chloroplast thylakoid | 0,0407 | 3,18E-004 | 24 | ||
MOLECULAR FUNCTION | GO:0016491 | oxidoreductase activity | 0,0007 | 1,79E-006 | 100 | |
GO:0005506 | iron ion binding | 0,0031 | 1,11E-005 | 29 | ||
GO:0003682 | chromatin binding | 0,0223 | 1,27E-004 | 21 | ||
GO:0016161 | beta-amylase activity | 0,0362 | 2,35E-004 | 4 | ||
GO:0003677 | DNA binding | 0,0402 | 2,82E-004 | 75 | ||
GO:0008792 | arginine decarboxylase activity | 0,0402 | 2,97E-004 | 3 | ||
GO:0004645 | phosphorylase activity | 0,0407 | 3,22E-004 | 4 | ||
GO:0016760 | cellulose synthase (UDP-forming) activity | 0,0409 | 3,27E-004 | 8 | ||
GO:1,901,505 | carbohydrate derivative transporter activity | 0,0457 | 3,99E-004 | 8 | ||
Stella | BIOLOGICAL PROCESS | GO:0009644 | response to high light intensity | 0,0024 | 2,43E-007 | 9 |
GO:0048582 | positive regulation of post-embryonic development | 0,0071 | 1,45E-006 | 6 | ||
GO:0009408 | response to heat | 0,0411 | 3,42E-005 | 9 | ||
GO:0007623 | circadian rhythm | 0,0411 | 3,96E-005 | 6 | ||
GO:0009719 | response to endogenous stimulus | 0,0411 | 4,58E-005 | 21 |