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Table 2 Enriched transcription factor binding sites in promoters of DE transcripts located outside of 5A

From: Ubiquitin-related genes are differentially expressed in isogenic lines contrasting for pericarp cell size and grain weight in hexaploid wheat

TF family

Observed in all expressed transcripts (n = 101,653)

Expected in outside 5A DE transcript (n = 38)

Observed in outside 5A DE transcripts (n = 38)

FDR adjusted p-value

C2H2

77,987

29

36

0.021

Myb/SANT

88,575

33

38

0.021

AT-Hook

90,203

34

38

0.028

YABBY

19,447

7

15

0.034

MADF;Trihelix

16,632

6

13

0.042

  1. Values are the number of transcripts in which binding sites associated with the specified transcription factor (TF) family are present