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Table 2 The differentially expressed genes involved in sucrose degradation and starch synthesis pathways

From: Transcriptome analysis reveals potential mechanisms for different grain size between natural and resynthesized allohexaploid wheats with near-identical AABB genomes

Functional category

Gene IDa

Description

Log2 fold changeb

FDR-adjusted P-value

Major CHO metabolism. Degradation. sucrose. Invertases

TRIAE_CS42_4AL_TGACv1_288169_AA0939320

Vacuolar invertase

1.42

7.74E-06

TRIAE_CS42_4AL_TGACv1_288169_AA0939350

Vacuolar invertase

2.27

5.23E-04

TRIAE_CS42_4DL_TGACv1_342608_AA1117890

Cell wall invertase

1.56

2.30E-02

TRIAE_CS42_5BL_TGACv1_404129_AA1285640

Cell wall invertase

6.21

4.38E-21

TRIAE_CS42_5DL_TGACv1_433511_AA1415210

Cell wall invertase

2.29

8.19E-06

TRIAE_CS42_6AS_TGACv1_487805_AA1573040

Cell wall invertase

1.81

1.56E-09

TRIAE_CS42_6BS_TGACv1_514515_AA1660840

Cell wall invertase

1.24

2.21E-09

TRIAE_CS42_7AS_TGACv1_569119_AA1807690

Vacuolar invertase

2.38

5.75E-21

TRIAE_CS42_7AS_TGACv1_569629_AA1820610

Vacuolar invertase

1.49

1.16E-02

TRIAE_CS42_7AS_TGACv1_571086_AA1844330

Vacuolar invertase

1.26

3.85E-04

TRIAE_CS42_7DS_TGACv1_622623_AA2042790

Vacuolar invertase

1.42

9.07E-06

TRIAE_CS42_7DS_TGACv1_622976_AA2048120

Vacuolar invertase

3.26

4.97E-28

TRIAE_CS42_U_TGACv1_645154_AA2143350

Cell wall invertase

1.05

1.71E-03

TRIAE_CS42_U_TGACv1_645154_AA2143370

Cell wall invertase

1.03

2.48E-07

TRIAE_CS42_1AL_TGACv1_002147_AA0039110

Cell wall invertase

−3.03

1.42E-07

TRIAE_CS42_1BL_TGACv1_030243_AA0083360

Cell wall invertase

−3.29

5.86E-07

TRIAE_CS42_1DL_TGACv1_061368_AA0193220

Cell wall invertase

−2.93

5.66E-05

TRIAE_CS42_2AL_TGACv1_093126_AA0272730

Cell wall invertase

−1.95

1.27E-04

TRIAE_CS42_2BL_TGACv1_130262_AA0407610

Cell wall invertase

−3.38

6.12E-09

TRIAE_CS42_2DL_TGACv1_159903_AA0544110

Cell wall invertase

−1.14

4.71E-04

TRIAE_CS42_4AL_TGACv1_288169_AA0939300

Vacuolar invertase

−4.23

6.36E-07

TRIAE_CS42_6AS_TGACv1_486383_AA1560850

Vacuolar invertase

−3.18

4.03E-06

TRIAE_CS42_6BS_TGACv1_513852_AA1650710

Vacuolar invertase

−1.89

4.46E-02

TRIAE_CS42_6BS_TGACv1_515140_AA1667640

Vacuolar invertase

−3.17

9.25E-05

TRIAE_CS42_6DS_TGACv1_542882_AA1732150

Vacuolar invertase

−2.92

3.76E-07

TRIAE_CS42_7AS_TGACv1_570692_AA1839380

Vacuolar invertase

−2.64

2.06E-05

TRIAE_CS42_7DS_TGACv1_621614_AA2021150

Vacuolar invertase

−1.54

8.16E-03

TRIAE_CS42_7DS_TGACv1_622753_AA2044760

Vacuolar invertase

−4.78

1.20E-19

TRIAE_CS42_U_TGACv1_642336_AA2115990

Neutral invertase

−1.11

8.73E-03

Major CHO metabolism. Degradation. sucrose. Susy

TRIAE_CS42_1AL_TGACv1_002916_AA0046300

Sucrose synthase

4.20

1.42E-09

TRIAE_CS42_2AS_TGACv1_112101_AA0330380

Sucrose synthase

2.25

2.76E-16

TRIAE_CS42_2BS_TGACv1_145971_AA0451230

Sucrose synthase

1.85

1.34E-11

TRIAE_CS42_2DL_TGACv1_159703_AA0541730

Sucrose synthase

1.89

5.80E-05

TRIAE_CS42_2DS_TGACv1_177457_AA0577630

Sucrose synthase

2.71

9.79E-17

TRIAE_CS42_4AL_TGACv1_288793_AA0958320

Sucrose synthase

1.30

1.73E-05

TRIAE_CS42_7AS_TGACv1_569135_AA1808380

Sucrose synthase

2.60

1.96E-16

 

TRIAE_CS42_7DS_TGACv1_622658_AA2043420

Sucrose synthase

2.94

1.09E-24

TRIAE_CS42_6DL_TGACv1_527850_AA1709240

Sucrose synthase

−1.74

3.14E-07

TRIAE_CS42_7DL_TGACv1_604951_AA2003310

Sucrose synthase

−1.96

3.18E-09

Major CHO metabolism. Synthesis. starch. AGPase

TRIAE_CS42_1AL_TGACv1_000939_AA0022300

AGPase plastidial large subunit

9.51

9.06E-110

TRIAE_CS42_1BL_TGACv1_031712_AA0119450

AGPase plastidial large subunit

1.26

9.23E-05

TRIAE_CS42_7AS_TGACv1_569682_AA1821750

AGPase plastidial large subunit

1.29

2.65E-06

TRIAE_CS42_7DS_TGACv1_622617_AA2042690

AGPase plastidial large subunit

1.52

6.37E-08

Major CHO metabolism. Synthesis. starch. Debranching

TRIAE_CS42_1DL_TGACv1_061778_AA0203340

Isoamylase 2

1.15

3.90E-07

TRIAE_CS42_7DS_TGACv1_622495_AA2040790

Isoamylase 1

1.07

6.13E-04

Major CHO metabolism. Synthesis. starch. Starch branching

TRIAE_CS42_2AL_TGACv1_095785_AA0314520

Starch branching enzyme 2

2.85

4.50E-10

TRIAE_CS42_2BL_TGACv1_132845_AA0440100

Starch branching enzyme 2

1.43

3.85E-05

TRIAE_CS42_2DL_TGACv1_158200_AA0512220

Starch branching enzyme 2

1.87

1.96E-09

 

TRIAE_CS42_7AL_TGACv1_556597_AA1766610

Starch branching enzyme 2

2.83

1.68E-14

TRIAE_CS42_7AL_TGACv1_556597_AA1766630

Starch branching enzyme 2

2.97

3.57E-14

TRIAE_CS42_7BL_TGACv1_577598_AA1879190

Starch branching enzyme 2

4.12

3.24E-14

TRIAE_CS42_7BL_TGACv1_580343_AA1913520

Starch branching enzyme 2

2.28

6.22E-08

TRIAE_CS42_7DL_TGACv1_603128_AA1976400

Starch branching enzyme 2

2.77

2.09E-05

TRIAE_CS42_7DL_TGACv1_603128_AA1976410

Starch branching enzyme 2

4.79

9.97E-23

TRIAE_CS42_7AL_TGACv1_556924_AA1773500

Starch branching enzyme 1

−1.06

2.63E-02

Major CHO metabolism. Synthesis. starch.starch synthase

TRIAE_CS42_1AS_TGACv1_020151_AA0075220

Starch synthase 3

1.77

3.39E-12

TRIAE_CS42_1BL_TGACv1_030553_AA0093880

Starch synthase

1.93

1.18E-10

TRIAE_CS42_1BS_TGACv1_050983_AA0177050

Starch synthase 3

1.07

2.87E-05

TRIAE_CS42_2BL_TGACv1_131141_AA0423210

Starch synthase 3

−1.09

9.71E-04

TRIAE_CS42_2DL_TGACv1_157939_AA0502660

Starch synthase

−1.02

1.31E-03

  1. aGenes for qRT-PCR analysis are shown in bold
  2. bFold change indicates that gene expression change in XX329 compared to TAA10