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Table 1 Cotyledon genes (common to two hairy lines) with potential to impact host plant responses to flea beetles and diamondback moth

From: The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

   

Fold change relative to Westar

Gene ID

Sub-categories

Description

AtGL3 line

K-5-8 linea

Metal Handling

 bo7g039050

general

SBP3 (selenium-binding protein 3)

1.07E+301

1.07E+301

 bo9g123330

binding, chelation, storage

NAS2 (NICOTIANAMINE SYNTHASE 2)

3.96E+08

3.92E+09

 bo4g040020

"

ATSERAT2;1, SAT5, SAT1 (O-SERINE ACETYLTRANSFERASE 2;1)

8.99

352.70

 bra002851

"

NAS2 | NAS2 (NICOTIANAMINE SYNTHASE 2)

47.80

77.58

 bra015594

"

MT1C; copper ion binding

4.42

10.20

 bra009595

"

MT2A, ATMT-K, ATMT-1 (METALLOTHIONEIN 2A)

3.23

7.38

 bo5g008330

"

MT1C; copper ion binding

4.41

7.17

Wax

 bo8g102710

synthesis

KCS4 (3-KETOACYL-COA SYNTHASE 4)

3.33

5.83

 bra033983

"

YBR159, KCR1 | YBR159; ketoreductase/oxidoreductase

4.59

2.81

 bra004034

"

CUT1, POP1, CER6, G2, KCS6 (3-KETOACYL-COA SYNTHASE 6)

29.07

2.58

 bo7g019710

"

KCS9 (3-KETOACYL-COA SYNTHASE 9)

1.67

2.42

 bra024749

"

CUT1, POP1, CER6, G2, KCS6 (3-KETOACYL-COA SYNTHASE 6)

2.83

1.51

Cell Wall

 bra011899

modification

ATEXLA2, EXPL2, ATHEXP BETA 2.2 (EXPANSIN-LIKE A2)

9.17

12.64

 bra024848

"

EXGT-A3, XTH27, hydrolase, xyloglucan:xyloglucosyl transferase

3.29

4.03

 bo3g018260

precursor synthesis

UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)

4.72

18.03

 bra006722

"

"

3.87

9.62

 bra021798

"

ATCSLB03, ATCSLB3 cellulose synthase/ glycosyl transferase

6.43

5.18

 bo1g037390

"

ATCSLG2 cellulose synthase/ glycosyl transferase

3.73

3.17

 bra016440

cell wall proteins

unknown protein

8.59

101.30

 bo4g194100

"

proline-rich extensin-like family protein

5.50E+04

11.24

 bra037731

"

"

33328.67

7.21

 bra026268

"

hydroxyproline-rich glycoprotein family protein

20.79

5.06

 bo1g051380

"

"

9.65

4.97

 bra003200

degradation.mannan-xylose-arabinose-fucose

PMR6 (powdery mildew resistant 6); pectate lyase

5.41E+12

190.90

 bra024089

"

MERI5B, MERI-5, SEN4 (meristem-5); hydrolyzing glycosyl bonds

3.13

66.59

 bo4g108130

"

pectinesterase family protein

6.87

43.88

 bra009234

"

ATPGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); binding

44.74

37.33

 bo2g127040

"

pectinacetylesterase, putative

3.30

19.53

 bra010038

"

ATBXL1 (BETA-XYLOSIDASE 1); hydrolyzing O-glycosyl compounds

1.70

9.03

 bo2g013480

degradation.pectate lyases/polygalacturonases

glycoside hydrolase family 28 protein

5.78

7.76

 bo6g058470

"

PMR6 (powdery mildew resistant 6); pectate lyase

1.96E+05

4.92

Lignin

 bo3g024650

biosynthesis

ATC4H, C4H, CYP73A5 (CINNAMATE-4-HYDROXYLASE)

2717.78

39.35

 bra036480

"

HCT (SHIKIMATE/QUINATE HYDROXYCINNAMOYL COA-TRANSFERASE)

2.72

2.68

Flavonoids

 bra018364

dihydroflavonols

UGT71D1 (UDP-GLUCOSYL TRANSFERASE 71D1)

7.75

12.33

 bra037386

"

"

7.15

9.32

 bo9g003740

"

"

65.69

6.15

Phenylpropanoids

 bra028893

phenylpropanoids

transferase family protein

14.84

17.57

 bra029364

"

NIC2 (NICOTINAMIDASE 2); catalytic nicotinamidase

5.46

8.84

 bo3g167180

"

O-methyltransferase family 2 protein

10.07

8.41

 bo7g064020

"

transferase family protein

12.06

4.93

Alkaloids

 bra003263

N misc. alkaloid-like

strictosidine synthase family protein

416.91

3.94

 bo6g054230

"

"

17.29

2.92

Cyanogenic glucosides

 bra014956

cyanase

CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase

7.06

6.21

  1. aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line.